MitoEAGLE protocols, terminology, documentation

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COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping


MitoEAGLE protocols, terminology, documentation



WG1

Standard operating procedures and user requirement document: Protocols, terminology, documentation


MITOEAGLE Working Groups

Project application

WG1 Description

The quality management system, scope of SOPs to be elaborated and the outline of the data repositories will be defined in a user requirement document.

Respirometric reference protocols

A ‘library of protocols’ applied in mitochondrial respiratory physiology will be collected in a standard format, delineating the diversity of experimental approaches to assess bioenergetic function. A set of reference protocols will rigorously document (Maelstrom Research program) the state-of-the-art standards in designing, conducting, reporting, interpreting, and validating such bioenergetic tests (see also Fig. 3).
MITOEAGLE Proficiency ring test

Interlaboratory proficiency test

Inter-laboratory ring tests are a basic requirement for quality management. Such proficiency tests require a reference sample which must be homogenous, stable, representative of the diagnostic target, amenable for distribution, and economical for large-scale production. For respiratory OXPHOS analysis a reference sample of structurally and functionally intact mitochondria is not yet available to perform corresponding ring tests (in contrast to enzymatic OXPHOS ring tests). Recently, the widely applied human cell line HEK 293T was found to be potentially suitable for cryopreservation. Upon thawing the cells can be used immediately for respirometry of both intact and permeabilized cells. Thus interlaboratory proficiency testing may now be feasible as a world-wide innovation in the field of mitochondrial respiratory physiology. Participating labs may implement the test for intra- and interlaboratory validation and longitudinal performance monitoring, using a reference OXPHOS protocol (Fig. 3). The organization of the proficiency test should follow the requirements of the ISO 17043 and 13528 standards. A corresponding MITOEAGLE proficiency training shall be developed and implemented. Feedback from the participants will lead to a final adjustment of the SOPs in the proficiency test, which will be made generally available.

Instrumental platforms

Comparison of results between and within instrumental platforms: The reference protocols and proficiency test will not define the instrumental platform, but will allow a quantitative comparison of results obtained with specific equipment available in the participating laboratories.

Nomenclature

Harmonization of nomenclature on mitochondrial respiratory states and control parameters: The logistics of development of a database requires application of strictly defined terms for all included variables. There is no general reference available upon which a consistent terminology on mitochondrial physiology and bioenergetics can be based. The MITOEAGLE consortium, therefore, has to accomplish the ambitious goal to unify and simplify the terminology in the field for the purpose of the QMS, which will lead to the development of recommendations for the use of a common terminology in mitochondrial physiological research. A publication will be prepared as an Open Access article which will be a milestone towards a unification of concepts and nomenclature.

Knowledge management system

With an increase in data volume and complexity comes along the requirement for standardized report formats and digital accessibility of the data. Since such a database is still missing for mitochondrial physiology, the goal of WG1 is to establish an integrated and analytic environment linking mitochondrial respiration with external data (cell physiology, anthropometry, spiroergometry, lifestyle, genomics) in the context of physical fitness evaluation and clinical diagnostics. Databases will be established combining biological and clinical data comprising proprietary and publicly available datasets into one integrated solution. Data import and export functionalities will allow data upload and mapping to corresponding objects in the database, in this way generating valuable data and allowing for project-specific as well as cross-project data mining.
The ability to formulate meta-studies in our approach is an important success factor: The platform can aggregate the project’s complete knowledge and provides the ability to make diagnostic profiling associated with diseases. In addition to functional data, other data types such as nutritional or environmental factors associated with disease prevention can be identified and aggregated into the MITOEAGLE Knowledge Management System.
Querying the heterogeneous data types and result representation are the most important requirements of the knowledge platform besides to data integration and modelling. The application will feature different types of visualization techniques for all integrated data types. The database will be developed using the concept of multi-tier client-server architecture. Individual components are separated corresponding to their functionality. An upstream web server handles user requests, an application server performing business logic, and a back-end database system guaranties persistent data storage. All components are additionally separated by means of network security incorporating firewalls and are hosted in a secure environment. The platform administration ensures privacy regarding proprietary data by user rights policies.
It will be the task of WG1 to continuously collect the input from all other WGs, compare, discuss and align SOPs as far as possible, and to finally develop recommendations for quality control, data reporting and data sharing beyond the published record. In addition, WG1 will develop concepts on Open Access and institutionalized service for data management, data mining and health-care conforming standards of data interpretation. Finally, it will provide a summary on strategic dissemination and an education programme for MITOEAGLE. The education programme will ensure that not only presently participating groups will adhere to the set standards but that also groups joining in at later points may smoothly fit into the community and help to further broaden and deepen our understanding on mitochondrial physiology in health and disease.

WG1 Management

Tasks

  1. Opening of the database to the research public for data search and moderated entry of new data sets.
  2. Development of interlaboratory proficiency ring test, of recommendation/certification reports and of a MITOEAGLE proficiency training module (with WG5).
  3. Sample distribution, ring test experiments (MITOEAGLE-proficiency training on two different points of time, 6 months apart), data analysis by experimenters and MITOEAGLE-proficiency test manager.
  4. Reports and publication: Reports with specific results in comparison with an anonymous data summary, and joint publication. Individual reports may be complemented by recommendations, and are summarized in an informal certification report (move to WG5).
  5. Instrumental platform comparison with reference sample applying comparable measurements.
  6. Draft, dissemination, collection and final formulation of a manuscript on concepts and terminology of mitochondrial physiology (with WG5).
  7. Collect and discuss procedures and experimental protocols for the evaluation of mitochondrial capacities and create a library of protocols: A database comprising reference SUIT protocols, standard experimental media, and detailed instructions for OXPHOS analysis is assembled.
  8. MITOEAGLE data management system (DMS) development: The DMS for further data preprocessing. The DMS will enable management and analysis of instrument-specific and project-specific data.
  9. MITOEAGLE database (DB) development: DB will facilitate high-level project specific analysis as well as meta-analyses across projects, visualization of project specific data as well as integrative analyses of datasets for various proprietary and/or publicly available datasets.
  10. Testing of developed software components regarding functionality and usability, modification and implementation. Deployment for routine testing in the labs of our strategic partners.
  11. Data input: Upload of datasets generated through WG 2-4 in internal lab developments, results of the proficiency ring test, and during application module developments. In addition, the database will be populated with available proprietary and public datasets.
  12. Develop recommendations for quality control, data reporting and data sharing beyond the published record. Develop concepts on Open Access and institutionalized service for data management, data mining and health-care conforming standards of data interpretation (move to WG5).
  13. Provide a summary on strategic dissemination and an education programme for MITOEAGLE (move to WG5).


Milestones

  1. Data sets entered in standardized format and database opened for the public
  2. Protocols for ring-tests and standard analysis and report scheme defined
  3. MITOEAGLE proficiency training workshop finished (move to WG5)
  4. Analysis is completed and joint publication submitted (with WG5)
  5. Publication of paper on concepts and terminology (with WG5)
  6. Library of protocols online
  7. Publication of recommended protocols and procedures
  8. Guidelines for acquisition, evaluation and data documentation available (with WG5)
  9. MITOEAGLE data management system finished
  10. MITOEAGLE database ready for use
  11. Software modifications incorporated following extensive tests
  12. Publication of MITOEAGLE-KMP
  13. Recommendations on data acquisition, evaluation and management published (with WG5)
  14. Concepts on Open Access and institutionalized service for data management, data mining and health-care conforming standards of data interpretation published (move to WG5)


Deliverables

  1. Guidelines for future research and recommendations for the evaluation of respiratory characteristics in human respirometric samples (with WG5)
  2. A database on mt fitness evaluated with human cells and tissues
  3. Training of researchers towards improved reproducibility of sample preparation and respirometric evaluation (move to WG5)
  4. Qualitative and quantitative evaluation of results obtained in ongoing studies by comparison with a reference sample
  5. An expanded MITOEAGLE database
  6. A joint publication documenting the results of the MITOEAGLE-PT (with WG5)
  7. A multi-authored publication towards a unification of concepts and nomenclature in mitochondrial physiology (with WG5)
  8. A library of protocols for sample preparation and examination by respirometry
  9. A multi-authored publication with recommendations of comparable standard protocols and procedures.
  10. Guidelines as to the optimum use of a reference sample for determination of respiration and related parameters of interest.
  11. The MITOEAGLE data management system.
  12. A continuously updated MITOEAGLE database for the use as reference data and guideline towards application of optimized protocols, ultimately leading towards standardization.
  13. A joint publication on the use of the MITOEAGLE database and management system.
  14. An education programme for the use of MITOEAGLE database and management system.


WG1 Participants and task groups

WG1 Participants

CountryCityContact
ArmeniaYerevanTrchounian K
AustraliaSouthportVidimce Josif
AustraliaClaytonWolff Jonci Nikolai
AustraliaBurwoodTrewin Adam J
AustraliaQueenslandRadenkovic Filip
AustraliaNedlandsPerks Kara L
AustraliaVictoriaVan Bergen Nicole J
AustraliaGeelong, VictoriaMcKenzie Matthew
AustraliaQueenslandHolland Olivia J
AustraliaSydneyHoehn Kyle L
AustraliaMelbourneGenders Amanda J
AustraliaClayton VictoriaAlton Lesley
AustraliaQueenslandDong Lan-Feng
AustraliaMelobourneBotella Javier
AustraliaMelbourne, VICMuccini Anna Maria
AustraliaMelbourneCoughlan Melinda T
AustraliaSydneyKrycer James R
AustraliaMelbourneLionett S
AustraliaSyndeyTon Riccardo
AustraliaMelbourneCassar Samantha
AustraliaMelbourneHewakapuge Sudinna
AustraliaMelbourneWhitfield Jamie
AustraliaNewtown, SydneyStocker Roland
AustraliaVictoriaWinwood-Smith Hugh
AustraliaQueenslandFisher Joshua J
AustraliaNedlandsFilipovska Aleksandra
AustraliaMelbourneStepto Nigel K
AustraliaMelbourneFerri Alessandra
AustraliaMelbourneKuang Jujiao
AustraliaMelbourneSaner Nicholas
AustraliaParkvilleHardee Justin P
AustriaInnsbruckGnaiger Erich
AustriaInnsbruckHoppel Florian
AustriaInnsbruckGallee Leon
AustriaInnsbruckCardoso Luiza HD
AustriaInnsbruckDi Marcello Marco
AustriaAldransHaider Markus
AustriaInnsbruckAntunes Diana
AustriaInnsbruckBurtscher Martin
AustriaInnsbruckNindl Veronika
AustriaInnsbruckGarcia-Souza Luiz F
AustriaInnsbruckThapa Maheshwor
AustriaViennaKozlov Andrey V
AustriaInnsbruckPassrugger Manuela
AustriaKapferer Werner
AustriaKlosterneuburgSazanov Leonid A
AustriaInnsbruckSchartner Melanie
AustriaInnsbruckKarabatsiakis Alexander
AustriaInnsbruckLaner Verena
AustriaInnsbruckDoerrier Carolina
AustriaInnsbruckKlocker Helmut
AustriaInnsbruckSobotka Ondrej
AustriaInnsbruckMeszaros Andras T
AustriaInnsbruckKeller Markus A
AustriaInnsbruckGoebel G
AustriaInnsbruckSchmitt Sabine
AustriaInnsbruckBergmeister Lisa
AustriaInnsbruckCecatto Cristiane
AustriaInnsbruckPlangger Mario
AustriaSalzburgKofler B
AustriaInnsbruckSchwarzer Christoph
AustriaInnsbruckPerez Valencia Juan Alberto
BelgiumLeuven, FlandersBaekelandt V
BelgiumLiegeVotion Dominique-Marie
BelgiumBrusselsSonveaux P
BelgiumNamurArnould Thierry
BelguimSart Tilman (Liège)Kruse C
BrasilPorto AlegreHaas Clarissa
BrasiliaLimeiraRopelle Eduardo R
BrazilSao PauloVercesi Anibal E
BrazilSão PauloKowaltowski Alicia J
BrazilRio de JaneiroGalina Antonio
BrazilSanta Maria - Rio Grande do SulSoares Felix Alexandre Antunes
BrazilRio de JaneiroOliveira Marcus F
BrazilSanta Maria - RSGoncalves Debora Farina
BrazilRio de JaneiroVieyra Adalberto
BrazilSao PauloSilber Ariel Mariano
BrazilSão PauloCrispim Marcell
BrazilJaboticabalOliveira Marcos Tulio
CanadaHamiltonScott Graham R
CanadaMontreal, QuebecBergdahl Andreas
CanadaSaint JohnPulinilkunnil Thomas
CanadaQuebecJoseph Vincent
CanadaOttawaHarper Mary-Ellen
CanadaGuelphHolloway Graham P
CanadaAntigonishWeir M
CanadaEdmontonHan Woo Hyun
CanadaMontréalBreton Sophie
CanadaWinnipegChowdhury Subir Roy
CanadaEdmonton (Alberta)Lemieux Helene
CanadaHamiltonTarnopolsky Mark A
CanadaOttawaDarveau Charles-A
CanadaMoncton, NBPichaud Nicolas
CanadaVancouverBovard Josh
CanadaVancouver, BCTausan Daniel
CanadaRimouskiMunro Daniel
CanadaCharlottetownAdiele Reginald C
CanadaEdmontonLucchinetti Eliana
CanadaEdmontonZaugg Michael
CanadaRimouskiBlier Pierre U
ChileCoyhaiqueJana Prado Fabian
ChinaTianjinZhang Yong
ChinaPukou, Nanjing,Gan Zhenji
ChinaFuzhou, Fujian ProvinceChen Qi
ChinaXi`anLiu Jiankang
CroatiaSplitLjubkovic M
CroatiaZagrebSaric A
CroatiaZagrebRubelj Ivica
CroatiaZagrebCurik I
Czech RepublicPardubiceMajtnerova Pavlina
Czech RepublicPraha 2Zdrazilova Lucie
Czech RepublicVestecRohlena Jakub
Czech RepublicPragueHoustek Josef
Czech RepublicPardubiceRousar Tomas
Czech RepublicHradec KraloveStankova Pavla
Czech RepublicHradec KraloveKucera Otto
Czech RepublicHradec KraloveEndlicher Rene
Czech RepublicPragueDrahota Zdenek
Czech RepublicHradec KraloveCervinkova Zuzana
Czech RepublicCeske BudejoviceZikova Alena
Czech RepublicPraha 2Danhelovska Tereza
Czech RepublicPardubiceHandl Jiri
Czech RepublicVestecEzrova Zuzana
Czech RepublicVestecDavidova Eliska
Czech RepublicPragueKrizova J
Czech RepublicPrague 10Urban Tomas
Czech RepublicPlzen -Severni predmestiJedlicka Jan
Czech repHradec KraloveFalaye T
DenmarkCopenhagenKraunsoee R
DenmarkCopenhagenNielsen B
DenmarkCopenhagen NMaise Chroeis K
DenmarkCopenhagen NMortensen OH
DenmarkAarhus NJespersen Nichlas Riise
DenmarkAarhus NBoetker Hans Erik
DenmarkRoskildeDalgaard Louise T
DenmarkHvidovreNehlin Jan O
DenmarkCopenhagenSoendergaard SD
DenmarkCopenhagenGonzalez-Franquesa Alba
DenmarkCopenhagenDela Flemming
DenmarkCopenhagen NScheibye-Knudsen Morten
DenmarkCopenhagenLarsen Steen
EgyptCairoAbdel-Rahman Engy Ali
EgyptCairoAli Sameh S
EstoniaTallinnPuurand Marju
EstoniaTallinnVendelin Marko
EstoniaTallinnTruu Laura
EstoniaTallinnLaasmaa Martin
EstoniaTallinnKlepinina Lyudmila
EstoniaTartuPaju Kalju
EstoniaTallinnKarro N
EstoniaTallinnTepp Kersti
EstoniaTallinnShevchuk Igor
EstoniaTallinnKaambre Tuuli
EstoniaTallinnKlepinin Aleksandr
FinlandTurkuStier Antoine
FinlandJyvaeskylaeKainulainen Heikki
FinlandHelsinkiSuomalainen Wartiovaara Anu
FinlandHelsinkiJackson Christopher Benjamin
FranceGueguen Naig
FranceBordeauxSarlak Saharnaz
FranceAngersSpinazzi Marco
FranceBordeauxAmoedo Nivea Dias
FranceParisArmand Anne-Sophie
FranceMartiniqueCano Sanchez Maria Consolacion
FranceMontpellierWrutniak-Cabello Chantal
FranceNouzillyCollin-Chenot Anne
FranceBordeaux cedexMourier A
FranceBordeaux cedexRossignol Rodrigue
FranceMaisons-Alfort CedexProla Alexandre
FranceAngersProcaccio Vincent
FranceMartiniqueNeviere Remi
FranceParisBouillaud Frederic
FranceToursDumas Jean-Francois
FranceLilleMontaigne David
FranceBordeauxMazat Jean-Pierre
FrancePlouzanéSalin Karine
GermanyUlmSchaefer PM
GermanyDuesseldorfRoden Michael
GermanyMarburgVogt Sebastian
GermanyMarburgRamzan Rabia
GermanyDüsseldorfGoy C
GermanyCologneHo Dieu Hien
GermanyHannoverDas Anibh Martin
GermanyDuesseldorfJelenik T
GermanyRegensburgRenner-Sattler Kathrin
GermanyColognePesta Dominik
GermanyCologneTrifunovic Aleksandra
GermanyWickert Anika
GermanyFrankfurtOsiewacz Heinz D
GermanyNeuherbergEiner C
GermanyFrankfurtWarnsmann Verena
GermanyBremerhavenMark Felix Christopher
GermanyGießenGrewal Rekha
GermanyWilhelmshavenSalmon Pablo
GermanyFreiburgSchuele R
GermanyTuebingenKappler Lisa
GermanyFrankfurt am MainViel Christian
GermanyRostockSokolova Inna
GermanyCologneWiesner Rudolf J
GermanyMainzMethner Axel
GermanyMagdeburgSchoenfeld Peter
GermanyFrankfurtHamann Andrea
GermanyGiessenSchulz Rainer
GermanyGießenSilaidos Carmina
GermanyMainzMaull Felicia
GermanyDoermann Niklas
GermanyGiessenSommer Natascha
GermanyMunichZischka Hans
GermanyJenaSzibor Marten
GermanyDuesseldorfHaendeler Judith
GermanyBiberach an der RißNold V
GermanyCologneMaciej Sarah
GermanyDuesseldorfPiel Sarah
GreeceThessalonikiLazou Antigone
GreeceHeraklionTavernarakis Nektarios
GreeceAthensTrougakos Ioannis P
GreeceAthensGumeni Sentiljana
Greece15771Andreadou Ioanna
HungarySzegedFerdinandy Peter
HungaryBudapestKomlodi Timea
HungaryBudapestTretter Laszlo
HungaryBudapestChinopoulos Christos
HungarySzegedBoros Mihaly
HungaryDebrecenVerebne Tar K
HungaryBudapestHorvath G
IndiaNew DelhiThakkar Himani
IndiaKollamSuravajhala Prashanth
IndiaHaryanaChakrabarti Sasanka
IndiaVaranasiSonkar Vijay K
IndiaHyderabadJha Rajan Kumar
IndiaNew DelhiVincent Vinnyfred
IndiaLucknowGayen Jiaur
IranTehranSafaei Zahra
IranTehranShirazi Reza
IrelandDublinPorter Richard K
IrelandDublinO'Gorman Donal
IsraelZrifinSova Marina
IsraelBeer ShevaMishmar Dan
IsraelJerusalemSaada Reisch Ann
IsraelRishon Le ZionHachmo Yafit
ItaliaUdineSalvadego Desy
ItalienPadova PDSzabo Ildiko
ItalyCataniaDe Pinto Vito
ItalyAnconaBattino Maurizio
ItalyPadovaBernardi Paolo
ItalyBolognaPaterlini S
ItalyUdineGrassi B
ItalyMonserratoIsola Raffaella
ItalyPadovaFernandez-Vizarra Erika
ItalyCataniaMessina Angela
ItalyBariAttimonelli M
ItalyRomeScatena Roberto
ItalySt. LorenzenHarrison David K
ItalyMilanClementi Emilio
ItalyPadovaViscomi Carlo
ItalyBolognaGasparre G
ItalyBolognaPorcelli AM
ItalyBolzanoZanon Alessandra
ItalyCataniaMagri Andrea
ItalyBolognaGenova Maria Luisa
ItalyMilanoBottoni P
ItalyBolzano/BozenVolani Chiara
JapanSapporoMatsumoto J
JapanItabashi-ku TokyoTanaka Masashi
KitzbühelInnsbruckFischer Michael J
KoreaSeoulPak Youngmi Kim
KoreaIncheonKwak Hyo Bum
Korea (South)SeoulLee Hong Kyu
LatviaRigaDambrova Maija
LatviaRigaVolska Kristine
LatviaRigaInashkina I
LatviaRigaJansone Baiba
LatviaRigaSvalbe Baiba
LatviaRigaZvejniece Liga
LatviaRigaVilks Karlis
LatviaRigaLiepins Edgars
LatviaRigaStelfa Gundega
LuxembourgStrassenDevaux Yvan
MalaysiaKuala LumpurHassan Hazirah
MaltaMsidaVella Joanna
MexicoMexico CityAparicio Trejo OE
MexicoTlalpanRodriguez-Enriquez Sara
MéxicoSan Pedro Garza García, Nuevo LeonGarcia-Rivas Gerardo
NetherlandsMaastrichtGrevendonk L
NetherlandsGA WageningenGrefte Sander
New ZealandAucklandHickey Anthony J
New ZealandAucklandKaur Sarbjot
New ZealandWellingtonBerridge Michael V
New ZealandAucklandWard Marie Louise
NorwayTrondheimLerfall Joergen
NorwayBergenTronstad Karl Johan
NorwayBergenBlindheim Dan Filip
NorwayBergenPettersen Nitschke Ina Katrine
NorwayOsloEide L
NorwayTrondheimRognmo O
NorwayBergenBerge Rolf K
NorwayBergenDyrstad Sissel E
NorwayBergenRoesland Gro Vatne
NorwayTrondheimGrill V
NorwayTromsoeBoardman Neoma T
NorwayBergenHaavik Jan
NorwayBergenHoel Fredrik
NorwayTrondheimSmenes Benedikte Therese
PolandWarsawKampa Rafal Pawel
PolandWarsawWieckowski Mariusz R
PolandPoznanJarmuszkiewicz Wieslawa
PolandWarsawDymkowska Dorota
PolandWarsawZablocki Krzysztof
PolandLodzWatala Cezary
PolandWarsawBednarczyk Piotr
PolandWarsawSzewczyk Adam
PolandLodzLabieniec-Watala Magdalena
PolandWarsawKarkucinska-Wieckowska Agnieszka
PolandWarsawSek Aleksandra
PolandKrakowDembinska-Kiec Aldona
PolandGdańskKaczor Jan Jacek
PolandWarsawWasilewski M
PolandWarszawaJaskiewicz Anna
PortugalCoimbraRolo Anabela Pinto
PortugalPortoSilva Ana Maria
PortugalCantanhedeAmorim Ricardo
PortugalCoimbraPalmeira Carlos
PortugalCoimbraDuarte Filipe Valente
PortugalAveiroFerreira Rita Maria P
PortugalLisboaMacedo Maria Paula
PortugalCoimbraOliveira Paulo J
PortugalPortoMoreira Bruno P
PortugalCoimbraMinuzzi Luciele M
PortugalAveiroVitorino Rui Miguel Pinheiro
PortugalPortoOliveira Pedro Fontes
PortugalPortoAlves Marco G
PortugalCoimbraDias Candida
PortugalPortoCrisostomo Luis
PortugalCoimbraGrilo Luis
PortugalCoimbraSantos Diana
PortugalPortoBeleza Jorge
PortugalPortoOliveira Jorge
PortugalCantanhedeTeodoro Joao Soeiro
PortugalCantanhedeRodrigues Ana Sofia
QatarDohaGuarch Meritxell Espino
Republic of GhanaCape CoastTei BN
Republic of KoreaBusanKim Hyoung Kyu
Republic of KoreaYuseong-gu DaejeonQuang Don T
Republic of KoreaBusanHan Jin
Republic of KoreaDaejeonPark SH
Republic of SerbiaBelgradeKrako Jakovljevic Nina
Republic of SerbiaNovi SadAndric Silvana
Republic of SerbiaBelgradeLalic Nebojsa M
RussiaMoscowVinogradov Andrei D
RussiaMoscowPavlova Nadia
RussiaYoshkar-OlaDubinin M
SerbiaBelgradeMisirkic Marjanovic Maja
SerbiaBelgradeDjordjevic M
SerbiaBelgradeSavkovic U
SerbiaBelgradeMandic M
SingaporeSingaporeHausenloy Derek J
SingaporeSingaporeSingh Brijesh Kumar
SlovakiaBratislavaSumbalova Zuzana
SlovakiaKošiceCizmarova Beata
SlovakiaBratislava 45Ferko Miroslav
SpainValenciaCasado Pinna Marta
SpainBarcelonaPerales Jose Carles
SpainA CoruñaMayan MD
SpainBarcelonaGil J
SpainA CoruñaBlanco FJ
SpainGranadaQuiles JL
SpainMadridHernansanz-Agustin Pablo
SpainMadridAragones Lopez J
SpainSevillaBustos Matilde
SpainMadridRial Eduardo
SpainLas Palmas de Gran CanariaCalbet Jose AL
SpainBarcelonaGarcia-Roves Pablo Miguel
SpainArmilla (Granada)Fernandez-Ortiz Marisol
SpainBarcelonaDe la Torre Lara J
SpainMadridMoran M
SpainSalamancaAlmeida Angeles
SpainBarcelonaBravo-Sagua Roberto
SpainBarcelonaZorzano Antonio
SpainBarcelonaGoncalo Teixeira da Silva Rui
SpainBarcelonaGama Perez Pau
SpainGranadaHidalgo-Gutierrez A
SwedenStockholmLarsen Filip J
SwedenStockholmShabalina Irina G
SwedenLundEhinger Johannes K
SwedenStockholmCardinale Daniele A
SwedenGothenburgBhuvanachandran NS
SwedenStockholmNedergaard J
SwitzerlandLausanneAmati Francesca
SwitzerlandLausanneCanto Alvarez Carles
SwitzerlandLausanneLagarrigue Sylviane
SwitzerlandLausanneGebara E
SwitzerlandLausanneZalachoras I
SwitzerlandLausanneWeger M
SwitzerlandLausanneZanou Nadege
SwitzerlandZürichZaugg Kathrin
SwitzerlandLausanneMorato Fornaguera L
SwitzerlandBernWyss RK
SwitzerlandLausanneSandi Carmen
SwitzerlandBaselFornaro Mara
SwitzerlandBernNuoffer Jean-Marc
SwitzerlandBaselBouitbir Jamal
SwitzerlandLausannePlace Nicolas
SwitzerlandZurichGorr Thomas A
SwitzerlandLausanneBurtscher Johannes
SwitzerlandLausanneDonnelly Chris
TaiwanChanghua CityWei Yau-Huei
The NetherlandsBT AmsterdamWuest Rob CI
The NetherlandsMaastrichtNabben Miranda
The NetherlandsDelftMcMillan Duncan GG
The NetherlandsMaastrichtSchrauwen Patrick
The NetherlandsGroningenBakker Barbara M
UKCanterbury, KentGourlay Campbell W
UKLondonRodriguez Enrique
UKLondonBettinazzi Stefano
UKCambridgeBrown Guy C
UKLondonLane Nick
USALos AngelesKwast Kurt E
USACorvallisRobinson Matthew M
USASt. LouisAbumrad Nada A
USAWinston-SalemTomar Dhanendra
USAPhiladelphiaJang David H
USAPuskarich Michael A
USAAtlantaJang Young Charles
USALittle RockParajuli Nirmala
USAProvoHancock Chad R
USAAuroraMoreau Kerrie
USADavisAdams Sean H
USALittle RockBorsheim Elisabet
USALittle RockMacMillan-Crow Lee Ann
USAAuroraSparagna Genevieve C
USACorvallisNewsom Sean A
USAEl PasoBajpeyi Sudip
USAOrlandoCoen Paul M
USALa JollaSchilling Jan M
USAIndianapolisBrozinick Joseph T
USAStillwaterDavis Michael S
USAFort CollinsLi Puma Lance C
USAWinston-SalemAhn Bumsoo
USAChicagoDayanidhi Sudarshan
USACorvallisBatterson Philip M
USAFairbanksCoker Robert H
USAEast LansingBazil Jason N
USABethesdaFessel Joshua Patrick
USASan Diego; La JollaMolina Anthony JA
USAOrlandoPino Maria F
USABerkeleyWilliams Caroline M
USASt. LouisPietka Terri A
USAIowa CityWagner Brett A
USAWakefieldVarricchio Frederick
USALa JollaValentine Joseph Marco
USADenverVan Hove Johan
USAJupiterTrivigno Catherine
USABirminghamMoellering Douglas R
USAPittsburghJurczak Michael J
USASan DiegoCannon Daniel T
USAClevelandTandler Bernard
USAOrlandoGoodpaster Bret H
USALouisvilleSkolik Robert A
USAColumbusSims Carrie A
USANew YorkGalkin Alexander
USADentonDzialowski Edward M
USARochesterNair K Sreekumaran
USAAnn ArborTyrrell Daniel J
USASan DiegoPatel Hemal H
USAGainesvilleLeeuwenburgh Christiaan
USAKansas CitySwerdlow Russell H
USABaton RougeHand Steven C
USAMiamiFontanesi F
USAMilwaukeeDash Ranjan K
USAFayettevilleRao RR
USALouisvilleMenze Michael A
USAEast LansingZhang Yizhu
USAFairbanksO'Brien Kristin
USAWarminsterOrynbayeva Zulfiya
USABostonKristal Bruce S
USABaltimoreGonzalez-Freire Marta
USAMilwaukeeKandel Sunil Mani
USARochesterLanza Ian R
USABaton RougeIrving Brian A
USAFort CollinsChicco Adam J
USABethesdaSharma Pushpa
USADurhamLi Pingan Andy
USAPittsburghProchownik Edward V
USAGreenvilleNeufer P Darrell
USANeedhamBrown David A
USAClevelandHoppel Charles L
USANorfolkLai Nicola
USAFayettevilleIyer Shilpa
USANashvilleWasserman David H
USAColorado SpringsJacobs RA
USAAuroraFord Ellen
USANew HavenCavalcanti-de-Albuquerque Joao Paulo
USAGainesvilleNeyroud D
USAPortlandGarlid Keith D
USAKansas CityThyfault John P
USAGalvestonDurham William J
USAOrlandoSparks Lauren M
USAPhiladelphiaFalk Marni J
USAAkronCohen Bruce H
USAIowa CityChaurasia Bhagirath
... further results

WG1 Task groups

WG1 Comments and discussion

  1. We are mostly interested in two WG: (1) Since we are working mostly with heart and muscles, we are interested in WG 2 - MITOEAGLE data repository in muscle and other tissues. (2) WG 1 - Standard operating procedures and user requirement document: Protocols, terminology, documentation. Since we have an expertise in fatty acid metabolism, we are specially interested in experimental protocols for the evaluation of mitochondrial capacities regarding fatty acid metabolism. Of course our parts of the WG are also in our interest. - Marina Makrecka-Kuka, Edgars Liepinsh (2016).
  2. My role in Mito-EAGLE would be mainly in WG 2 and 4, with a focus on skeletal and cardiac muscle and cultured cardiomyocytes and endothelial cells. I would particularly like to bridge the gap between the group leaders and young investigators, trying to represent the young people who are the active users of the OROBOROS equipment. This will fit in nicely with the goals in WG1. ... Major congratulations on obtaining this beautiful collaborative grant! Very glad to see this network getting the recognition it deserves! Looking forward to being part of this! - Rob C Wuest (2016).
  3. Please, find enclosed my declaration to participate with my team in the following workgroups: WG1, WG2, WG3, WG4. We are now involved and have been in not a distant past – in studying of the following cell /tissue types:
    1. Blood cells, with particular emphasis on platelets and lymphocytes – isolated from animals and humans.
    2. Endothelial cells, fibroblasts, neurocytes (neuroblastoma), astrocytes, cancer cell lines – predominantly cultured.
    3. Hepatocytes, cardiomyocytes, cell isolated from brain – isolated from lab animals. - Cezary Watala (2016).
  4. I have already contacted the portuguese CNC to nominate me for the MC of theaction. Concerning my active participation, taking into account the type of work we do in my lab I could be included in all WGs. As you know we work with mitochondria from liver, muscle and fat, as well as cultured cells from different origins (WG2-4). The elaboration of SOPs (WG1) we can certainly contribute (see the book I edited on Mitochondrial Bioenergetics and in which you contribute a chapter). I believe that everybody can be part of the WG5, but as the coordinators of the action, you and Sandra should decide what is best for the success of the action. - Carlos Palmeira (2016).
  5. I would propose my participation in the WG1: Standard operating procedures and user requirement document: Protocols, terminology, documentation, considering that the goal of WG1 is to establish an integrated and analytic environment linking mitochondrial respiration with external data (cell physiology, anthropometry, spiroergometry, lifestyle, genomics) in the context of physical fitness evaluation and clinical diagnostics. I could give my active contribution in the phase of making platform that will aggregate the Action’s complete knowledge and provides the ability to make diagnostic profiling associated with diseases in particular tasks:
    1. Develop reccomendations for quality control, data reporting and data sharing beyond the published record. Develop concepts on Open Access and institutionalised service for data management, data mining and health-care conforming standards of data interpretation
    2. Provide a summary on strategic dissemination and an education programme for MITOEAGLE.
    3. Considering that we are in process of buying the oxygraph, thus broading capacities of my lab, I would be happy to open the door of my new lab for the innovative inter-laboratory ring test experiments and together with my team contribute in that phase of the MITOEAGLE Action. I look forward to the establishment of MitoGlobal EAGLE network where, as stated in the MoU, researchers will collaborate on mapping mitochondrial physiology and medicine. The creation of such a unique well-coordinated network of senior researchers and young investigators will definitely put an added value to existing data and publications, will increase quality and validity of the research, will bring new possibilities of data sharing and data mining and will hopefully bring us to the era of more economical research by saving resources through standardised and harmnonised protocols, where the measuremnts will not be wasted due to lack of comparability. - Nebojsa Lalic (2016).
  6. Our research interest is oriented to reproductive endocrinology; especially to mechanisms that govern steroidogenesis of testicular Leydig cells in disturbed homeostasis. We use several in vivo models:
    1. stress -/+ systemic or intratesticular blockade of different stress receptors (alpha1ADR; betaADR; GR)
    2. hypogonadal-hypogonadism -/+ testosterone-replacement therapy
    3. androgens anabolics treatment -/+ blockade od AR
    4. aged rats -/+ Viagra-treatment
    5. biological clock - Silvana Andric (2016).
  7. I took a look to the MoU and the different working groups. You know well my research focus and having this into account I am interested in actions related to Working group 1 (Respirometric reference protocols, Interlaboratory proficiency test, Instrumental platforms). Working group 2 and 3: I have generated multiple mitochondrial respiration data sets in different mouse tissues (mainly in skeletal muscle, hypothalamus, liver and white adipose tissue). Currently we are also performing these assays in white adipose tissue from human patients. Hence I am interested in all milestones of WG 2 and 3. WG 5 is related to WG 1 and as you know I have interest in training, dissemination and also together with my collaborators (if needed) we could help with data sets and a data interpretation. Overall, I have a general interest on this Action and my active role in MITOEAGLE could be discussed. I could be of help participating in some of the tasks where my expertise and interest fit best. We will be forming and interdisciplinary research group with four group leaders: JC Perales, R Guimera, M Sales-Pardo and PM Garcia-Roves with two different affiliations, University of Barcelona (JCP and PMG-R - Energy metabolism) and University Rovira I Virgili (RG and MS – Data base, statistics, data mining). - Pablo M Garcia-Roves (2016).
  8. I will be pleased to contribute to the tasks of WG1 by developing interlaboratory proficiency tests and instrumental platform comparison. - Maria Luisa Genova (2016).


Projects in progress

Interlaboratory proficiency ring test
» MitoFit proficiency test
Testing of software components
» MiPNet21.07 MitoFit DatLab PT
Concepts and terminology on mitochondrial physiology
» MitoPedia: Respiratory states
» MitoPedia: Respiratory control ratios
» MitoPedia: SUIT
Procedures and experimental protocols for the evaluation of mitochondrial capacities, library of protocols
» MitoPedia: Sample preparations
» MitoPedia: Media for respirometry
» MitoPedia: Substrates and metabolites
» MitoPedia: SUIT
» MiPNet21.06 SUIT reference protocol
» MitoFit-QCS
Data management system (DMS)
» MitoFit-KMP
Database
» MitoFit Quality Control System
» MiPMap


Next steps

Best practices for implementation of analytical and process standards.


References

» ISO/IEC 17043:2010 General requirements for proficiency testing
» ISO 13528:2015 Statistical methods for use in proficiency testing by interlaboratory comparison
» ISO 15189:2012 Medical laboratories — Particular requirements for quality and competence
» ISO 17511:2003 In vitro diagnostic medical devices
» ISO 9001:2015 Quality management systems - requirements
» ISO 10012:2003 Measurement management systems
General requirements for the competence of testing and calibration laboratories » ISO/IEC 17025:2005
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