Difference between revisions of "Talk:Hydrogenion flux"

Revision as of 15:00, 22 April 2020

high-resolution terminology - matching measurements at high-resolution

Talk:Hydrogenion flux

Description

Volume-specific proton flux is measured in a closed system as the time derivative of proton concentration, expressed in units [pmol·s^-1·mL^-1]. It is comparable to volume-specific oxygen flux [pmol·s^-1·mL^-1], which is the (negative) time derivative of oxygen concentration measured in a closed system, corrected for instrumental and chemical background. Proton flux can also be measured in an open system at steady state, when any acidification of the medium is compensated by external supply of an equivalent amount of base (pH stat).

Abbreviation: J_H+

Reference: Gnaiger 2014 MitoPathways

Proton flux versus ECAR

The extracellular acidification rate (ECAR) is the change of pH in the incubation medium over time and can only be measured in a closed system. pH is the negative decadic logarithm of proton activity which is, in diluted solutions, in close approximation to the negative decadic logarithm of proton concentration. Measured changes in pH over time (ECAR) must therefore be transformed from the logarithmic to the linear scale to obtain extracellular proton flux. Therefore, ECAR is of interest in relation to acidification issues in the incubation buffer or culture medium but must not be confused with the physiologically relevant metabolic proton flux.

Proton flux versus glycolytic flux

Measurement of extracellular proton flux and glycolytic flux are related under specifically controlled conditions. Such conditions must be carefully evaluated, may require modifications of protocols, must be corrected for acid-base reactions unrelated to glycolytic flux and thus need data analysis beyond reporting changes of pH. Glycolytic flux involves 1) the conversion of glucose to pyruvate (Glycolysis) and 2) the conversion of pyruvate to lactate (cytosol) or the conversion of pyruvate into Acetyl-CoA, feeding into the TCA cycle (mitochondria). The catabolism of pyruvate can have an impact on extracellular proton flux illustrated by the following equations:

As we can observe, the production of protons per molecule of glucose is three times higher by carbon dioxide generated in mitochondria than by conversion of pyruvate to lactate in the cytosol. Furthermore, the equations illustrate that the measurement of proton flux alone is not sufficient to determine the origin of the protons. Experimental settings can help to estimate the main source of proton production, e.g. by inhibition of Oxidative Phosphorylation (link to SUIT protocols).

To accurately measure biologically induced changes in pH induced by extracellular proton flux, the buffering capacity of the medium has to be small but still sufficient to keep the pH in the desired range for a limited period of time. In this case, the buffering capacity has to be determined (MiPNet23.15 O2k-pH ISE-Module) and taken into account when extracellular proton flux is calculated from the measured changes in pH. An alternative approach is to use buffers with very low buffering capacity and keep the pH value inside the desired limits by a pH-Stat. Here, extracellular proton flux can either be calculated be calculated by changes in pH over time (previous calculation of buffering capacity of the medium required) or by the amount of injected base via pH Stat. MiPNet23.15 O2k-pH ISE-Module

Measurement of proton flux with the O2k-pH ISE-Module

The Oroboros O2k supports the modular O2k-MultiSensor extension for recording potentiometric (voltage) signals simultaneously with the oxygen signals in both O2k-chambers. Potentiometric measurements result in a voltage signal (pX) which is typically a linear function of the logarithm of the activity (concentration) of the substance of interest (the analyte). A calibrated pH electrode displays the negative decadic logarithm of the H⁺ ion activity (potentia hydrogenii) and thus got its name “pH electrode”.

Applications

For simultaneous measurement of O2 and pH, we refer to the classical literature on bioenergetics and the discovery of the chemiosmotic coupling mechanism, the quantification of H+/O2 stoichiometric ratios for proton pumping (Peter Mitchell). Other groups (e.g. SE_Lund_Elmer E) have used the pH electrode in the O2k in conjunction with a study of mitochondrial permeability transition.

The majority of novel applications will address aerobic glycolysis in intact cells, using the measurement of proton production as an indirect but continuous record of lactate production and corresponding acidification of the medium, while simultaneously monitoring oxygen concentration and oxygen consumption. Under specific metabolic conditions, lactic acid production is the dominant mechanism causing acidification, hence the pH measurement can be a good indirect indicator of aerobic glycolysis.

Additional resources

» O2k-Manual: MiPNet23.15 O2k-pH ISE-Module

» O2k-SOP: MiPNet08.16 pH calibration

» MitoPedia O2k and high-resolution respirometry: O2k hardware

MitoPedia O2k and high-resolution respirometry: O2k-Open Support

O2k signal and output

O2k signal: The O2k-pH ISE-Module is operated through the pX channel of the O2k, with electric potential (volt [V]) as the primary and raw signal
O2k output: type I and II

Compare measurement of pH with the pH electrode and ratiometric fluorometric methods (NextGen-O2k)

» Carboxy SNARF 1

» HPTS

Bioblast links: pH and protons - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

pH and protons

» pH

» hydrogen ion H⁺

» hydron H⁺

» hydronium ion H₃O⁺

» hydride H^-

» proton p⁺

» pH buffering capacity

» proton flux

» proton pump versus hydrogen ion pump

» proton leak

» proton slip

» protonmotive force

O2k-pH

» O2k-Catalogue: O2k-pH ISE-Module

» O2k-Manual pH electrode: MiPNet23.15 O2k-pH ISE-Module

» O2k-SOP: MiPNet08.16 pH calibration

» File:PH-Calibration-List.xls

» NextGen-O2k, ratiometric: Carboxy SNARF 1

» NextGen-O2k, ratiometric: HPTS

» pH calibration buffers

O2k-Publications

» O2k-Publications: O2k-pH ISE-Module

HRFR - general

» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual

» O2k signals and output

» O2k-SOP: MiPNet14.06 Instrumental O2 background

» MiPNet19.18A O2k-Series G: Start

» ESD

» O2k configuration

» O2k control

» O2k-FluoRespirometer

» O2k-Main Unit#O2k-Series

» Titration-Injection microPump

» Compare: O2k-TPP+_ISE-Module

DatLab

» DatLab 7

» MiPNet26.06 DatLab 7: Guide

» DatLab 6

» MiPNet19.18C DatLab 6: Guide

» MiPNet19.18D O2k-Series G and DatLab 6: Calibration

» Reference layouts for DatLab graphs

References

O2k-Manual: Contents: O2k-Core Manual.pdf

Chapter	Section	Last update
MiPNet07.08 User information	O2k-Manual: user information. PLEASE STUDY THIS MANUAL.	2017-11-03
MiPNet19.18 O2k-Series G Core manual	O2k-Core manual contents.	2016-08-08
MiPNet19.18B POS-service	Service of the polarographic oxygen sensor OroboPOS.	2021-06-23
MiPNet19.18C DatLab 6: Guide	DatLab-guide through the menus.	2016-08-24
MiPNet19.18E O2 flux analysis - DatLab 6	Oxygen flux analysis: DatLab real-time.	2016-08-08
MiPNet26.06 DatLab 7: Guide	DatLab-guide through the menus.	2021-06-02
MiPNet28.10 SmartPOS-service	SmartPOS: Service	2023-09-29

TIP2k-Manual***

» O2k-Catalogue: TIP2k

» O2k-Publications: TIP2k

Chapter	Section	Last update
MiPNet12.10 TIP2k-manual	Titration-Injection microPump TIP2k manual.	2021-07-08