Description
File:1Dig; 1SRot;2D;2c;3(Omy);4U;5Ama.png
Abbreviation: CCP ce-pce S(Rot)
Reference: A to analyse the coupling control in permeabilized cells in S(Rot)- pathway control state- SUIT-006
SUIT number: D073_ce1;1Dig;1Q;1SRot;2D;3Omy;4U;5Anoxia
O2k-Application: Q
SUIT-006 Q ce-pce D073 is a coupling-control protocol for simultaneous measurement of O2 flux and the Q-redox state in permeabilized cells. Different coupling control states are assessed (L(n) - P - E or L- P-L(Omy)- E) at the succinate-pathway control state.
After permeabilization of the plasma membrane, coenzyme Q2 mimetic is titrated since the naturally occurring CoQ is trapped in the mitochondrial inner membrane. CoQ2 reacts both with the mitochondrial complexes at the Q-binding site (CI, CII, and CIII) and with the detecting electrode of the Q-Sensor. Application of the lowest possible CoQ2 concentration is recommended to avoid any side reaction on the ETS caused by the mimetics. Our study shows that 1 Β΅M CoQ2 was sufficient to detect the Q-redox change without an influence on respiration. Importantly, CoQ2 mimetic should be titrated after permeabilization of the plasma membrane owing to the extramitochondrial Q-pools in the cell.
Rotenone, an inhibitor of Complex I, avoids oxaloacetate inhibition towards succinate dehydrogenase. Furthermore, rotenone is needed to detect the fully oxidized CoQ2 in the presence of sample and the coenzyme Q2 mimetic but in the absence of ADP and succinate for calculating the reduced Q fraction.
Succinate as a substrate of Complex II is oxidized to fumarate and supports electron transfer through CII to Q. Succinate with rotenone supports S-linked LEAK respiration and leads to an almost full reduction of CoQ2 which is reflected in the increase of the Q-signal.
ADP slightly oxidizes the Q-junction, reflected in a decrease of the Q-signal.
The use of oligomycin is optional, however, it provides important information when residual and endogenous adenylates are present (which may happen if ATPases are active in the sample). This situation may lead to overestimated LEAK respiration measured in the absence of adenylates - L(n). Therefore, oligomycin can be used to verify whether this occurs and obtain the LEAK state appropriately. Since higher concentrations of Omy can decrease the ET state induced upon the addition of uncoupler, the required concentration of Omy has to be assessed by the Omy titration test.
The uncoupler CCCP oxidizes CoQ2, however, using mouse cardiac mitochondria (see figures) U did not influence either O2 flux or the Q redox state which means that the respiration is not limited by the phosphorylation system in this sample type.
Anoxia was reached when the mitochondria consumed the oxygen in the O2k-chambers. In the absence of O2, the ETS upstream of CIV is reduced and thus leads to full reduction of CoQ2. This step is used as a reference step when calculating the reduced Q fraction. At the end of the protocol, the CIII inhibitor antimycin A can be added to check its effect on the fully reduced CoQ2 under anoxia.
In the DatLab software, SUIT-006 DLP files are currently provided for the categories N(PM) and S. For using this protocol with other substrate/inhibitor combinations, a personalized DLPU can be created. For O2 application with ce-pce, choose SUIT-006 O2 ce-pce D029 to create the DLPU, for mt, choose SUIT-006 O2 mt D047. For O2 and H2O2 measurements (AmR), choose SUIT-006 AmR mt D048, and for O2 and membrane potential measurements, choose SUIT-006 Fluo mt D034, for ATP measurement (MgG) choose SUIT-006 MgG mt D055, and for Q redox state detection with mt, choose SUIT-006 Q mt D071.
How to measure the Q redox state, see: MiPNet24.12 NextGen-O2k: Q-Module in preparation
Communicated by Komlodi T (last update 2021-02-01)
Representative traces
File:SUIT-006 Q ce-pce D073 traces.png
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
ce1 | ROUTINE | ce1
| ||
1Dig | REN | ce1;1Dig
|
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
1Q2 | REN | 1Q2
| ||
1Rot | ROX | 1Rot
| ||
1S | SL | S | CII | 1Q2;1Rot;1S
|
2D | SP | S | CII | 1Q2;1Rot;1S;2D
|
(3Omy) | SL(Omy) | S | CII | 1Q2;1Rot;1S;2D;(3Omy)
|
4U | SE | S | CII | 1Q2;1Rot;1S;2D;(3Omy);4U
|
5Anox | S | CII | 1Q2;1Rot;1S;2D;(3Omy);4U;5Anox
| |
6Ama | ROX | 1Q2;1Rot;1S;2D;(3Omy);4U;5Anox;6Ama
|
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- Coupling control
- Pathway control
- Β» Electron transfer pathway
- Β» Fatty acid oxidation pathway control state, F
- Β» NADH electron transfer-pathway state, N
- Β» Succinate pathway control state, S
- Β» NS-pathway control state, NS
- Β» Glycerophosphate pathway control state, Gp
- Β» Complex IV single step, CIV
- Β» Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- Β» Glutamate, G
- Β» Glycerophosphate, Gp
- Β» Malate, M
- Β» Octanoylcarnitine, Oct
- Β» Pyruvate, P
- Β» Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- + Reasonable duration of the experiment.
- - This protocol cannot be extended with the Complex IV module.
- - Careful washing is required after the experiment to avoid carry-over of uncoupler and inhibitors, if used.
Compare SUIT protocols
Chemicals and syringes
Step | Chemical(s) and link(s) | Comments |
---|---|---|
1Dig | Digitonin (Dig) |
Template:Chemicals SUIT-006 Q ce-pce D073
- Suggested stock concentrations are shown in the specific DL-Protocol.
References
Year | Reference | Organism | Tissue;cell | |
---|---|---|---|---|
MiPNet24.12 NextGen-O2k: Q-Module | 2021-10-29 | NextGen-O2k: Q-Module manual | ||
Komlodi 2021 BEC Q | 2021 | KomlΓ³di T, Cardoso LHD, Doerrier C, Moore AL, Rich PR, Gnaiger E (2021) Coupling and pathway control of coenzyme Q redox state and respiration in isolated mitochondria. Bioenerg Commun 2021.3. https://doi.org/10.26124/bec:2021-0003 | Mouse | Heart Nervous system |
MitoPedia concepts:
SUIT protocol,
SUIT A,
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MitoPedia methods:
Respirometry