Difference between revisions of "SUIT protocol library"

Revision as of 03:30, 19 August 2015

This page is in preparation (intern wiki: SUIT protocol library intern)

Classes of SUIT protocols with coupling and substrate control

A. CI-CII-CIV

B. FAO-CI-CII-CIV

C. CGPDH-CI-CII-CIV

D. FAO-CGPDH-CI-CII-CIV

Linear coupling control: at a single substrate state (classical State 3 -> State 4, or P -> L_T).
Linear substrate control: at a single coupling state (unusual).
Monodirectional linear coupling control: L_N -> P_D -> E_F
Bidirectional linear coupling control: L_N -> P_D -> L_Omy -> E_F

@@ Line 1: / Line 1: @@
 '''''This page is in preparation''''' (intern wiki: SUIT protocol library intern)
-<big><big>'''[[Substrate-uncoupler-inhibitor titration]] (SUIT) protocols
+<big><big>'''[[Substrate-uncoupler-inhibitor titration]] (SUIT) protocols</big>
-Classes of SUIT protocols with coupling and substrate control'''</big></big>
+Classes of SUIT protocols with coupling and substrate control'''</big>
+__TOC__
+== Structure ==
+# Select a [[#Pathway control states |pathway control state]]
+# Define substrates for each pathway state
 == Definition of states ==
@@ Line 23: / Line 29: @@
-== Substrate control states ==
+== Pathway control states ==
-=== Single substrate control states ===
+=== Single pathway control states ===
 # CI
@@ Line 34: / Line 40: @@
 # CGPDH
-=== Multiple substrate control states ===
+=== Multiple pathway control states ===
 '''A. CI-CII-CIV'''
@@ Line 59: / Line 65: @@
 '''D. FAO-CGPDH-CI-CII-CIV'''
-# FAO + CGPDH + CI + CII
+# FAO + CGPDH + CI + ...
-# FAO + CGPDH + CI + CII + CIV
+# CGPDH + FAO + CI + ...
-# FAO + CGPDH + CI + CI<small>&</small>CII + CII
+# CI + FAO + CGPDH + ...
-# FAO + CGPDH + CI + CI<small>&</small>CII + CII + CIV
+# CI + CGPDH + FAO + ...
 # ...