SUIT-002 O2 ce-pce D007: Difference between revisions
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{{MitoPedia | {{MitoPedia | ||
|abbr=FNSGp(Oct,PGM) | |abbr=FNSGp(Oct,PGM) | ||
|description=[[File:1D;2M.1;3Oct;3c;4M2;5P;6G;7S;8Gp;9U;10Rot-.png|400px]] | |description=[[File:ce1;1Dig;1D;2M.1;3Oct;3c;4M2;5P;6G;7S;8Gp;9U;10Rot-.png|400px]] | ||
|info='''A''' Reference protocol RP2; pce: permeabilized cells - '''[[SUIT-002]]''' | |||
|application=O2 | |||
|SUIT number=D007_ce1;1Dig;1D;2M;3Oct;3c;4M;5P;6G;7S;8Gp;9U;10Rot;11Ama;12AsTm;13Azd | |SUIT number=D007_ce1;1Dig;1D;2M;3Oct;3c;4M;5P;6G;7S;8Gp;9U;10Rot;11Ama;12AsTm;13Azd | ||
}} | }} | ||
::: [[MitoPedia: SUIT]] - '''[[SUIT reference protocol]] RP2''' | ::: [[MitoPedia: SUIT]] - '''[[SUIT reference protocol]] RP2 for permeabilized cells''' | ||
::: '''[[Categories of SUIT protocols|SUIT-category]]:''' FNSGp(Oct,PGM) | ::: '''[[Categories of SUIT protocols|SUIT-category]]:''' FNSGp(Oct,PGM) | ||
::: '''[[SUIT protocol pattern]]:''' diametral 1D;2M.1;3Oct;3c;4M2;5P;6G;7S;8Gp;9U;10Rot | ::: '''[[SUIT protocol pattern]]:''' diametral 1D;2M.1;3Oct;3c;4M2;5P;6G;7S;8Gp;9U;10Rot | ||
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== References == | == References == | ||
{{#ask:[[Category:Publications]] [[Additional label::SUIT- | {{#ask:[[Category:Publications]] [[Additional label::SUIT-002 O2 pce D007]] | ||
| ?Was published in year=Year | | ?Was published in year=Year | ||
| ?Has title=Reference | | ?Has title=Reference | ||
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{{Template:SUIT-002}} | {{Template:SUIT-002 pce}} | ||
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== Strengths and limitations == | |||
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== Compare SUIT protocols == | |||
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::::* [[SUIT-001 O2 pce D003]] (RP1): Harmonized SUIT protocol for permeabilized cells. | |||
{{MitoPedia concepts | {{MitoPedia concepts | ||
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|mitopedia method=Respirometry | |mitopedia method=Respirometry | ||
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{{Labeling | |||
|additional=SUIT-002}} | |||
[[Category:Publications]] |
Revision as of 15:15, 21 January 2019
Description
Abbreviation: FNSGp(Oct,PGM)
Reference: A Reference protocol RP2; pce: permeabilized cells - SUIT-002
SUIT number: D007_ce1;1Dig;1D;2M;3Oct;3c;4M;5P;6G;7S;8Gp;9U;10Rot;11Ama;12AsTm;13Azd
O2k-Application: O2
- MitoPedia: SUIT - SUIT reference protocol RP2 for permeabilized cells
- SUIT-category: FNSGp(Oct,PGM)
- SUIT protocol pattern: diametral 1D;2M.1;3Oct;3c;4M2;5P;6G;7S;8Gp;9U;10Rot
References
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
ce1 | ROUTINE | ce1
| ||
1Dig | REN | ce1;1Dig
|
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
1D | REN | 1D
| ||
2M.1 | ||||
3Oct | OctMP | F | FAO | 1D;2M.1;3Oct
|
3c | OctMcP | F | FAO | 1D;2M.1;3Oct;3c
|
4M2 | OctMP | F(N) | FAO | 1D;2M.1;3Oct;4M2;5P;6G;7S;8Gp;9U;10Rot
|
5P | OctPMP | FN | F&CI | 1D;2M.1;3Oct;4M2;5P
|
6G | OctPGMP | FN | F&CI | 1D;2M.1;3Oct;4M2;5P;6G
|
7S | OctPGMSP | FNS | F&CI&II | 1D;2M.1;3Oct;4M2;5P;6G;7S
|
8Gp | OctPGMSGpP | FNSGp | F&CI&II&GpDH | 1D;2M.1;3Oct;4M2;5P;6G;7S;8Gp
|
9U | OctPGMSGpE | FNSGp | F&CI&II&GpDH | 1D;2M.1;3Oct;4M2;5P;6G;7S;8Gp;9U
|
10Rot | SGpE | SGp | CII&GpDH | 1D;2M.1;3Oct;4M2;5P;6G;7S;8Gp;9U;10Rot
|
11Ama | ROX | 1D;2M.1;3Oct;4M2;5P;6G;7S;8Gp;9U;10Rot;11Ama
|
Step | Respiratory state | Pathway control | ET-Complex | Comment |
---|---|---|---|---|
## AsTm | AsTmE | CIV | CIV | |
## Azd | CHB |
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
Compare SUIT protocols
- SUIT-001 O2 pce D003 (RP1): Harmonized SUIT protocol for permeabilized cells.
MitoPedia concepts:
SUIT protocol,
SUIT A,
Find
MitoPedia methods:
Respirometry
Labels:
SUIT-002