O2k-Publications: Topics: Difference between revisions
From Bioblast
No edit summary |
No edit summary |
||
| Line 167: | Line 167: | ||
== Coupling control states == | == Coupling control states == | ||
::::{| class="wikitable sortable" style="text-align:center" | |||
! # | |||
! O2k-Publications | |||
! MitoPedia: [[Pathway control state]]s | |||
! Comment | |||
! O2k | |||
! Total | |||
|- | |||
| 1 | |||
| [[O2k-Publications: OXPHOS |''P'']] | |||
| style="text-align:left"|[[Image:P.jpg|link=OXPHOS capacity|OXPHOS]] [[OXPHOS capacity]] | |||
| style="text-align:left"|Oxidative phosphorylation capacity, saturating [[ADP |[ADP]]] | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::OXPHOS]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Coupling states::OXPHOS]] |format=count}} | |||
|- | |||
| 2 | |||
| [[O2k-Publications: ROUTINE |''R'']] | |||
| style="text-align:left"|[[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[ROUTINE respiration]] | |||
| style="text-align:left"|Physiological state, intact cells | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::ROUTINE]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Coupling states::ROUTINE]] |format=count}} | |||
|- | |||
| 3 | |||
| [[O2k-Publications: ETS |''E'']] | |||
| style="text-align:left"|[[Image:E.jpg|link=ETS capacity|ETS]] [[Electron transfer system capacity]] | |||
| style="text-align:left"|Maximal noncoupled respiration | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::ETS]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Coupling states::ETS]] |format=count}} | |||
|- | |||
| 4 | |||
| [[O2k-Publications: LEAK |''L'']] | |||
| style="text-align:left"|[[Image:L.jpg|link=LEAK respiration|LEAK]] [[LEAK respiration]] | |||
| style="text-align:left"|Resting state, non-phosphorylating respiration | |||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Coupling states::LEAK]] |format=count}} | |||
| {{#ask:[[Category:Publications]][[Coupling states::LEAK]] |format=count}} | |||
|- | |||
|} | |||
| Line 240: | Line 273: | ||
| 9 | | 9 | ||
| [[O2k-Publications: ROX |ROX]] | | [[O2k-Publications: ROX |ROX]] | ||
| style="text-align:left"|[[Residual oxygen consumption]] | | style="text-align:left"|[[Image:ROX.jpg|link=Residual oxygen consumption|ROX]] [[Residual oxygen consumption]] | ||
| style="text-align:left"|includes non-mitochondrial respiration | | style="text-align:left"|includes non-mitochondrial respiration | ||
| {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Pathways::ROX]] |format=count}} | | {{#ask:[[Category:Publications]][[Instrument and method::Oxygraph-2k]][[Pathways::ROX]] |format=count}} | ||
Revision as of 09:36, 10 November 2016
O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
- mt-Medicine (363 entries)
- Exercise physiology;nutrition;life style
- Comparative MiP;environmental MiP
- Pharmacology;toxicology
- mt-Biogenesis;mt-density
- Genetic knockout;overexpression
- Instruments;methods
Pathological states
- Alphabetical order
- Aging;senescence
- Alzheimer's
- Autism
- Cancer
- Cardiovascular
- COPD
- Diabetes
- Inherited
- Infectious
- Myopathy
- Neurodegenerative
- Obesity
- Parkinson's
- Sepsis
- Other
Stress conditions
- Alphabetical order
- Cell death
- Cryopreservation
- Hypoxia
- Ischemia-reperfusion injury and preservation
- Mitochondrial disease;degenerative disease and defect
- Oxidative stress;RONS
- Permeability transition
- Temperature: hypothermia; hyperthermia
Organisms
- Mammals
- Human
- Pig
- Horse
- Bovines
- Cat
- Dog
- Rabbit
- Mouse
- Rat
- Guinea pig
- Other mammals: including only mammals that are not listed as mammalian species above'.
- Model organisms
- Chicken (» Birds)
- Zebrafish (» Fishes)
- Drosophila (» Hexapods)
- Caenorhabditis elegans (» Nematodes)
- Artemia (» Crustaceans)
- Saccharomyces cerevisiae (» Fungi)
- Comparative MiP
- Non-mammals
- Birds (» Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
- Hexapods - insects, springtails; » Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes » Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues and cells
- Tissues - alphabetical order
•• Fat •• Genital •• Heart •• Kidney •• Liver •• Lung;Gill •• Nervous system •• Skeletal muscle
- Cell types - alphabetical order
•• Blood cells •• Endothelial;epithelial;mesothelial cell •• Fibroblast •• Islet cell;pancreas;thymus •• Lymphocyte •• Platelet •• Stem cells
- Cell lines - alphabetical order
•• CHO •• HEK •• HeLa •• Neuroblastoma •• HUVEC •• Macrophage-derived cell lines
Preparations
- Intact organism •• Intact organ •• Intact cells •• Permeabilized cells •• Permeabilized tissue •• Homogenate •• Isolated mitochondria •• SMP •• Chloroplasts •• Enzyme •• Oxidase and biochemical oxidation
Enzymes
- Alphabetical order
•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein
Regulation
- Alphabetical order
•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler
Coupling control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2867 3096 2 R 
ROUTINE respiration
Physiological state, intact cells 894 981 3 E 
Electron transfer system capacity
Maximal noncoupled respiration 0 0 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2613 2772
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 609 753 2 N N-pathway control state NADH-linked, level 4 2475 2623 3 S S-pathway control state Succinate-linked, level 3 1686 1794 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1580 1637 8 Other combinations 133 149 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1521 1573
MiPMap combinations - examples
- Examples for specific combinations
- O2k-Publications: Human skeletal muscle •• O2k-Publications: Human heart •• O2k-Publications: Skeletal muscle - human vs mouse
- Browse data
