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Difference between revisions of "Calcium"

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<big>'''under construction !'''</big>
<big>'''under construction !'''</big>




= Ca2+ and HRR=
= Ca2+ and HRR =




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== Ca buffering ==
== Ca2+ buffering ==


Mitochondria  are easily damaged even by the low calcium levels resulting from  impurities in chemicals and preparations. In fact the native  intracellular Ca2+ level may be below the total Ca2+ concentration in a  medium introduced as impurities of standard laboratory chemicals. In  respirometric experiments this is taken care of by "buffering away" all  the Ca2+ with e.g. EGTA. But buffering and measuring small differences  are of course at cross purpose. One strategy I have seen, is first using  a very weak Ca2+ buffering, just to keep Ca2+ impurities under control  and then add external Ca2+ in sufficient amounts to "out-titrate" the  buffer. In the subsequent part of the experiment the mitochondria should  be exposed to un-physiologicalyl high Ca2+ concentrations anyway.
Mitochondria  are easily damaged even by the low calcium levels resulting from  impurities in chemicals and preparations. In fact the native  intracellular Ca2+ level may be below the total Ca2+ concentration in a  medium introduced as impurities of standard laboratory chemicals. In  respirometric experiments this is taken care of by "buffering away" all  the Ca2+ with e.g. EGTA. But buffering and measuring small differences  are of course at cross purpose. One strategy I have seen, is first using  a very weak Ca2+ buffering, just to keep Ca2+ impurities under control  and then add external Ca2+ in sufficient amounts to "out-titrate" the  buffer. In the subsequent part of the experiment the mitochondria should  be exposed to un-physiologicalyl high Ca2+ concentrations anyway.




=== Calculation of free Ca<sup>2+</sup> concentrations ===
== Calculation of free Ca<sup>2+</sup> concentrations ==
To  work at physiological Ca<sup>2+</sup> concentrations  requires usually Ca<sup>2+</sup> buffering by chelating  agents. The calculation of  ''c''(Ca<sup>2+</sup>)<sub>free</sub> in such  solutions is quite complicated and the results depend i.a on ionic  strength, temperature, and - very strongly - on the pH. Tools for such  calculations are available on-line at Chris Pattons MAXCHELATOR Page  [http://maxchelator.stanford.edu/  maxchelator.stanford.edu] or the  [http://web.stanford.edu/~cpatton/webmaxcS.htm  web version]. Many  calculations, published or implemented in programs, depend on a single  set of data compiled by Martell and Smith <ref>Martell AE, Smith  RM (1989) Critical Stability Constants, 1: Amino Acids. Plenum  Press</ref>.
To  work at physiological Ca<sup>2+</sup> concentrations  requires usually Ca<sup>2+</sup> buffering by chelating  agents. The calculation of  ''c''(Ca<sup>2+</sup>)<sub>free</sub> in such  solutions is quite complicated and the results depend i.a on ionic  strength, temperature, and - very strongly - on the pH. Tools for such  calculations are available on-line at Chris Pattons MAXCHELATOR Page  [http://maxchelator.stanford.edu/  maxchelator.stanford.edu] or the  [http://web.stanford.edu/~cpatton/webmaxcS.htm  web version]. Many  calculations, published or implemented in programs, depend on a single  set of data compiled by Martell and Smith <ref>Martell AE, Smith  RM (1989) Critical Stability Constants, 1: Amino Acids. Plenum  Press</ref>.
Note that in spite of the availability of easy  to use software tools the calculation of free  Ca<sup>2+</sup> concentration is not simple. The accuracy of  these calculations is severely limited by several factors:
Note that in spite of the availability of easy  to use software tools the calculation of free  Ca<sup>2+</sup> concentration is not simple. The accuracy of  these calculations is severely limited by several factors:
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Please help us in our instrumental development by explaining what you would like to  do/ see in a Ca<sup>2+</sup> experiment and what you expect  from the measuring method: What Ca concentrations do you want to measure,  Ca<sup>2+</sup> release or uptake? What total concentration  change in a 2 ml chamber (!) do you expect? Do you want to measure in a  Ca buffered medium? (decreased sensitivity to changes) or without  Ca<sup>2+</sup> buffering but then how do you get to  physiological Ca<sup>2+</sup> concentration? Do you want to  measure at physiological Ca<sup>2+</sup>  concentrations?.......
Please help us in our instrumental development by explaining what you would like to  do/ see in a Ca<sup>2+</sup> experiment and what you expect  from the measuring method: What Ca concentrations do you want to measure,  Ca<sup>2+</sup> release or uptake? What total concentration  change in a 2 ml chamber (!) do you expect? Do you want to measure in a  Ca buffered medium? (decreased sensitivity to changes) or without  Ca<sup>2+</sup> buffering but then how do you get to  physiological Ca<sup>2+</sup> concentration? Do you want to  measure at physiological Ca<sup>2+</sup>  concentrations?.......


* Please add your comments in  the [[Calcium|Discussion page]]. Pease contact  [email protected] to set up an account.
Please add your comments in  the [[Calcium|Discussion page]]. Pease contact  [email protected] to set up an account.
 
== References ==
 
<references/>
 
<br>
{{#set:Technical service=Ca}}
 
 
[[Category:Technical service]]
[[Category:All]]

Revision as of 14:45, 16 March 2015


high-resolution terminology - matching measurements at high-resolution


Calcium

Description

Ca2+ ions, beside being a major material used in mineralization of bone (and teeth) play a major role in cellular signaling. (under construction)

Abbreviation: Ca

Reference: O2k-Publications: Calcium


MitoPedia methods: Fluorometry 




under construction !


Ca2+ and HRR

Options for measuring Ca2+

We discuss here measuring Ca2+ concentrations using fluorescence or an ion selective electrode (ISE) system. We recommend to use fluorescence methods for measuring Ca2+ concentrations. Fluorescence based methods for detection of Ca2+ are more easy to set up and are more widely used in biosciences than ISE based methods. However, there may be special applications in which determination of Ca2+ levels via ISE is advantageous. The use of a Ca2+ electrode in mitochondrial research was described by Moreno et al. [1] On this page we discuss topics related to the measurement of Ca2+ that apply to all available methods. Please see Calcium green for specific information about using the fluorophore Ca green to measure Ca2+ concentrations with the O2k-Fluorescence LED2-Module. Please see O2k-TPP+_ISE-Module#Calcium_electrode for specific information about measuring Ca2+ with an ISE system.


How to start a Ca2+ project

Please have a look at O2k-Publications: Calcium.


Another good starting point (and not only for a fluorescence based approach but also for measurements based on ISE) are the web pages of Invitrogen (see main page for links)and publications cited there. Reading existing Ca2+ related publications should give you a feeling for the issues involved. Some of them (the necessity of Ca2+ buffering, Ca2+ calibration buffers) are discussed in more detail below. Points to be addressed will be:

  • Can the problem be tackled by one of the fluorophores form Invitrogene's Ca green series? Which of them?
  • What kind of methods are published?

What the O2k-Fluorescence LED2-Module actually does, is to bring the functionality of a cuvette based spectrofluormeter (for selected excitation emission wavelengths) to the O2k chamber. So a publication using a cuvette based measurement of a Calcium green fluorophore should also be doable in the O2k with the fluorescence module. In contrast, the fluorescence module is not intended to supply the functions of e.g. a fluorescence microscope (with which e.g. it is possible to quantify the fluorescence from a single cell - we are always looking an the entire medium in the chamber, most of it will be OUTSIDE of the mitos/ cells - so typically we are monitoring concentrations outside of the sample).

Ideally initial experiments will follow published methods but with the additional dimensions of simultaneous measurement of respiration / control of oxygen concentration. A publication that can be used as a starting point should:

  • address the problems you are interested in
  • use one of the Ca green fluorophores to do so
  • using a cuvette based approach in a (spectro)fluorometer to do so.

With a bit more experience you may be able to follow publications that use a different Ca fluorphore by substituting it with a suitable Ca Green derivative.


We have complied a short reading list that may be of interest to those planing to to do Ca2+ measurements, with special emphasis on references describing the preparation of Ca2+ calibration buffers. Ca measurement reading list


Ca2+ buffering

Mitochondria are easily damaged even by the low calcium levels resulting from impurities in chemicals and preparations. In fact the native intracellular Ca2+ level may be below the total Ca2+ concentration in a medium introduced as impurities of standard laboratory chemicals. In respirometric experiments this is taken care of by "buffering away" all the Ca2+ with e.g. EGTA. But buffering and measuring small differences are of course at cross purpose. One strategy I have seen, is first using a very weak Ca2+ buffering, just to keep Ca2+ impurities under control and then add external Ca2+ in sufficient amounts to "out-titrate" the buffer. In the subsequent part of the experiment the mitochondria should be exposed to un-physiologicalyl high Ca2+ concentrations anyway.


Calculation of free Ca2+ concentrations

To work at physiological Ca2+ concentrations requires usually Ca2+ buffering by chelating agents. The calculation of c(Ca2+)free in such solutions is quite complicated and the results depend i.a on ionic strength, temperature, and - very strongly - on the pH. Tools for such calculations are available on-line at Chris Pattons MAXCHELATOR Page maxchelator.stanford.edu or the web version. Many calculations, published or implemented in programs, depend on a single set of data compiled by Martell and Smith [2]. Note that in spite of the availability of easy to use software tools the calculation of free Ca2+ concentration is not simple. The accuracy of these calculations is severely limited by several factors:

  • Many underlying thermodynamic constants may not be known precisely
  • Some thermodynamic constants necessary for adequate temperature correction may not be known at all
  • It may be difficult to set the experimental parameters pH and ionic strength with the necessary precision.

Some strategies to simplify the necessary calculations plus a method for the preparation of Ca buffers are presented in Tsien R, Pozzan T (1989) Measurement of cytosolic free Ca2+ with quin2. Methods Enzymol 172: }, 230-262. The Calcium calibration buffer kit (C3008MP) available from Life Technologies (former Invitrogen) is based on this publication.


Ca2+ calibration

A method for the preparation of Ca buffers is presented in Tsien R, Pozzan T (1989) Measurement of cytosolic free Ca2+ with quin2. Methods Enzymol 172: }, 230-262. The Calcium calibration buffer kit (C3008MP) available from Life Technologies (former Invitrogen) is based on this publication. Other recipes for ca claibratio nbuffers can be fou nd in the literure of the "readinf´g" list. Before deciding on a calibration method (or specific buffers from this method) one should cerfuly access the nees if the projet under consideration. First of all, which Ca concentrations should be measured? Maybe one wants to measure extracellular Ca2+ levels? - then no Ca2+ buffered buffered calibration solution will be necessary at all. Calibration at low (< 1µM) Ca2+ levels is typically done by using a series of Ca2+ calibration buffers. Each calibration solution typically contains a Ca2+ chelating agent, a pH buffer, CaCl2, and a salt (KCl) to adjust ionic strength. The pH of all solutions have to be adjusted very carefully. For calibrations spanning a large range (several orders of magnitude) of free Ca2+ concentrations it may be necessary to use calibration buffers with very different compositions. Unexpected features in calibration curve may in this case mainly due to the difficulties in calculating the free Ca2+ concentration, leading to different errors for different media compositions.


Application in biological experiments

Please help us in our instrumental development by explaining what you would like to do/ see in a Ca2+ experiment and what you expect from the measuring method: What Ca concentrations do you want to measure, Ca2+ release or uptake? What total concentration change in a 2 ml chamber (!) do you expect? Do you want to measure in a Ca buffered medium? (decreased sensitivity to changes) or without Ca2+ buffering but then how do you get to physiological Ca2+ concentration? Do you want to measure at physiological Ca2+ concentrations?.......

Please add your comments in the Discussion page. Pease contact [email protected] to set up an account.

References

  1. Moreno AJM, Vicente JA (2012) Use of a calcium-sensitive electrode for studies on mitochondrial calcium transport. Methods Mol Biol 810: 207-217.
  2. Martell AE, Smith RM (1989) Critical Stability Constants, 1: Amino Acids. Plenum Press