Talk:Bioblast alert 2015: Difference between revisions

Latest revision as of 16:20, 11 December 2019

Bioblast editors help

Some of the following topics - not more than four per alert - will be selected for a Bioblast alert and added above under next issue in preparation. Keep the text short, mainly providing the link to the Bioblast page or to an external link. Important topics may be added into the boxes of the Bioblast main page, to be included in a Bioblast alert later. See Bioblast alert from previous years to avoid too much repetition.

Gentle Science

Gentle Science:

MitoPedia: high-resolution terminology

high-resolution terminology - matching measurement at high-resolution.
Define – Measure: terminology and experimental approach
Define – Clarify: consider discrepancies, resolve problems

MitoGlobal

MiPevents
Conferences and Workshops

Bioblast news

What is new or updated on the website: Lists (chemicals, protocols, scientific service, ..). A term may be selected (perhaps related to the publication), updated, discussed in our group, and then presented in the Bioblast alert. As Bioblast is updated, the updated ‘article’ can be added to the prepared points for a future Bioblast alert.
Projects in mitochondrial science (COST HypoxiaNet; Framework programs; ..)
Links on the Bioblast website; networking in mitochondrial science, presentation of: MIG List, Mitochondrion journal and website; Mitochondrial Societies; ..

Bioblast alert at the turn of the year

Example: from 2015 to 2016

Move the page Bioblast alert 2015 to Bioblast alert 2016.
Copy the contents of the new page Bioblast alert 2016 into the old page Bioblast alert 2015. Delete sections unrelated to 2015; use a previous page (Bioblast alert 2014) as a template.
Edit the contents of the new page Bioblast alert 2016: delete the entries from the previous year, add under 'Bioblast alert - previous issues' a link to the previous year (Bioblast alert 2015).
Edit the REDIRECT on Bioblast alert from Bioblast alert 2015 to Bioblast alert 2016.
Edit the main page Bioblast, updating the header Bioblast alert 2016(01): 2016-0#-##.

Not included in Bioblast alert

The following topics are not 'Bioblast alert', since they may be considered too close to advertising:

MiPNet O2k-Publications: A Bioblast editor may select an O2k-Publication (or a small number of related publications), particularly from a MiPNet Reference Laboratory, may get in contact with the particular reference lab, update info on the lab, and ‘present’ the lab on the start page of the Bioblast website.
MiPNet Laboratories of the World: Contact the MiPNet laboratories: show link on the wiki, ask for updates on group, references, website, perhaps major projects (HypoxiaNet), perhaps add pictures, perhaps keywords/short description.

Circular: link to presented lab / special occasion (e.g. publication; conference presentation; new member; PhD thesis, ..

Popular Bioblast page

Bioblast alert has been accessed more than

35,000 times (2019-12-11)
30,000 times (2018-08-01)
25,000 times (2015-10-28)
20,000 times (2014-12-31)
15,000 times (2014-06-12)
10,000 times (2013-08-18)
5,000 times (2012-10-22)

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-[[File:Bioblast alert.jpg|240px|right]]
+[[File:Bioblast alert.jpg|240px|right|file=]]
-== Bioblast alert - in preparation ==
+== Bioblast editors help ==
+Some of the following topics - not more than four per alert - will be selected for a '''Bioblast alert''' and added above under '''next issue in preparation'''. Keep the text short, mainly providing the link to the Bioblast page or to an external link. Important topics may be added into the boxes of the [[Bioblast]] main page, to be included in a Bioblast alert later. See Bioblast alert from previous years to avoid too much repetition.
+=== Gentle Science ===
+[[Image:BB-Bioblast.jpg|left|30px|link=Gentle Science|Gentle Science]] '''Gentle Science''':
-=== Bioblast alert 2011(03): 2011-11-24 ===
+=== MitoPedia: high-resolution terminology ===
+* [[MitoPedia: Respiratory states|high-resolution terminology]]''' - matching measurement at high-resolution.
-*O2k-Publications: '''Fluorometry combined with high-resolution respirometry''' - Light guide inserted into the chamber through a black PEEK stopper<ref>[[Anderson 2011 Am. J. Physiol. Heart Circ. Physiol.|Anderson EJ, Rodriguez E, Anderson CA, Thayne K, Chitwood WR, Kypson AP (2011) Increased propensity for cell death in diabetic human heart is mediated by mitochondrial-dependent pathways. Am. J. Physiol. Heart Circ. Physiol. 300: H118-124.]]</ref>, or optical probe operated through the O2k-glass window<ref>[[Hickey 2011 J. Comp. Physiol. B.|Hickey AJ, Renshaw GM, Speers-Roesch B, Richards JG, Wang Y, Farrell AP, Brauner CJ (2011) A radical approach to beating hypoxia: depressed free radical release from heart fibres of the hypoxia-tolerant epaulette shark (''Hemiscyllum ocellatum''). J. Comp. Physiol. B. [Epub ahead of print] ]]</ref>.
-<references/>
-*High-resolution terminology - term of the week: '''[[Talk:Fluorometry|Fluorometry versus fluorimetry]]''', >>>new '''[[List of fluorimetry terms]]'''.
-*MiPNet Laboratory of the week - '''[[NZ Auckland Hickey AJ|Auckland, New Zealand: Anthony J Hickey]]''': (edit text: 6 O2k, guest lecturer at IOC66, joint project (Marsden), guest tutor at IOC59).
-=== Bioblast alert #### to select ===
-*O2k-Publication: '''Heart failure and mitochondrial dysfunction'''. Increased OXPHOS capacity after cold preservation of the human heart – a paradox resolved by a dyscoupling mechanism.
-::[[Lemieux 2011 Int. J. Biochem. Cell Biol.|Lemieux H, Semsroth S, Antretter H, Hoefer D, Gnaiger E (2011) Mitochondrial respiratory control and early defects of oxidative phosphorylation in the failing human heart. Int. J. Biochem. Cell Biol. 43: 1729–1738]]. >>> [[Talk:Lemieux 2011 Int. J. Biochem. Cell Biol.|Discussion: Complementary results on the PGC-1a pathway]].
-*'''[[Scientific service]]''': '''[[Tissue storage]]''' on ice is possible for limited periods of time (several hours) with preservation of mitochondrial respiratory function, as evaluated with [[SUIT protocol]]s.
-*Term of the week: '''[[Uncoupled]], [[non-coupled]], [[dyscoupled]]''' - a hallmark of high-resolution respirometry is a matching '''high-resolution terminology'''.
-::[[Talk:Uncoupled respiration|Evaluate an example of low-resolution terminology]]: '''''[[Dyscoupled respiration|Uncoupling]]''' was studied in stressed cells by measurement of coupled respiration, evaluation of '''[[LEAK|uncoupled]]''' respiration after inhibition with oligomycin, and FCCP titration to quantify '''[[non-coupled|uncoupled]]''' respiration''.
-=== Bioblast alert ## to select ===
-*O2k-Publication: '''Protocols for HRR: from intact cells to permeabilized muscle fibres'''
-::[[Pesta 2012 Methods Mol. Biol.|Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibres from small biopisies of human muscle. Methods Mol. Biol. 810: 25-58.]]
-=== Bioblast alert ### to select ===
-*O2k-Publication: ''Efficiency, basal respiration, and oxygen kinetics in human muscle'' or '''Mitochondrial efficiency and P/O flux ratios: new perspectives in mitochondrial physiology''' (see [[MitoCom_lectures#Journal_club|Journal club]]);
-::[[Larsen 2011 CellMetab|Larsen FJ, Schiffer TA, Borniquel S, Sahlin K, Ekblom B, Lundberg JO, Weitzberg E (2011) Dietary inorganic nitrate improves mitochondrial efficiency in humans. Cell Metab. 13: 149-159]].
-::[[Larsen 2011 FASEBJ|Larsen FJ, Schiffer TA, Sahlin K, Ekblom B, Weitzberg E, Lundberg JO (2011) Mitochondrial oxygen affinity predicts basal metabolic rate in humans. FASEB J. 25: 2843-2852]].
-*Before alert, ask to join as MiPNet Reference Lab, and present new MiPNet Reference Lab
-*Term: efficiency versus P/O ratio
-== Bioblast alert - concept ==
-Here is a brief summary on the concept of '''Bioblast alert'''.
-Some of the following topics (not more than four per alert) will be selected for a '''Bioblast alert'''.
-=== MiPNet O2k-Publications ===
-* Topic: [[O2-kinetics]]; [[coupling]]; pathology; ...
-* Preparation: [[Homogenate]]/[[isolated mitochondria]]; intact/permeabilized [[cells]]; [[permeabilized fibre]]/in vivo
-* Protocols
-=== MiPNet Laboratories of the World ===
-Contact the [[MiPNet]] laboratories: show link on the wiki, ask for updates on group, references, website, perhaps major projects ([[HypoxiaNet]]), perhaps add pictures, perhaps keywords/short description.
-Circular: link to presented lab / special occasion (e.g. publication; conference presentation; new member; PhD thesis, ..
-=== High-resolution terminology ===
-*[[List of respiratory states|high-resolution terminology]]''' - matching measurement at high-resolution.  Term of the week: '''[[Basal respiration]]'''
 * Define – Measure: terminology and experimental approach
 * Define – Clarify: consider discrepancies, resolve problems
-=== MiP''events'' ===
+=== MitoGlobal ===
+* MiP''events''
 * Conferences and Workshops
-=== Bioblast ===
+=== Bioblast news ===
-* What is new or updated on the website: Lists (chemicals, protocols, scientific service, ..)
+* What is new or updated on the website: Lists (chemicals, protocols, scientific service, ..). A  term may be selected (perhaps related to the publication), updated, discussed in our group, and then presented in the Bioblast alert. As Bioblast is updated, the updated ‘article’ can be added to the prepared points for a future Bioblast alert.
 * Projects in mitochondrial science (COST [[HypoxiaNet]]; Framework programs; ..)
-* Links on the Bioblast website; networking in mitochondrial science, presentation of: MIG List, Mitochondrion journal and website; Mitochondrial Societies
+* Links on the Bioblast website; networking in mitochondrial science, presentation of: MIG List, Mitochondrion journal and website; Mitochondrial Societies; ..
-* MitoCom News
-=== Bioblast editors ===
+=== Bioblast alert at the turn of the year ===
+Example: from 2015 to 2016
+# Move the page [[Bioblast alert 2015]] to '''Bioblast alert 2016'''.
+# Copy the contents of the new page '''Bioblast alert 2016''' into the old page [[Bioblast alert 2015]]. Delete sections unrelated to 2015; use a previous page ([[Bioblast alert 2014]]) as a template.
+# Edit the contents of the new page '''Bioblast alert 2016''': delete the entries from the previous year, add under 'Bioblast alert - previous issues' a link to the previous year ([[Bioblast alert 2015]]).
+# Edit the REDIRECT on [[Bioblast alert]] from [[Bioblast alert 2015]] to '''Bioblast alert 2016'''.
+# Edit the main page [[Bioblast]], updating the header '''Bioblast alert 2016(01): 2016-0#-##'''.
-A [[Bioblast editorial board|Bioblast editor]] may select an O2k-Publication (or a small number of related publications), particularly from a MiPNet Reference Laboratory, may get in contact with the particular reference lab, update info on the lab, and ‘present’ the lab in the alert. A  term may be selected (perhaps related to the publication), updated, discussed in our group, and then presented in the alert. An editor does not even have to present an entire alert, but may prepare individual ‘points’, which then can be added to a particular alert. As Bioblast is updated, the updated ‘article’ (term, publication etc) can be added to the prepared points for a future alert.
+=== Not included in Bioblast alert ===
+The following topics are not 'Bioblast alert', since they may be considered too close to advertising:
-==== Draft circular to MiPNet Reference Laboratories ====
+# MiPNet O2k-Publications: A [[Bioblast editorial board|Bioblast editor]] may select an O2k-Publication (or a small number of related publications), particularly from a MiPNet Reference Laboratory, may get in contact with the particular reference lab, update info on the lab, and ‘present’ the lab on the start page of the Bioblast website.
+# MiPNet Laboratories of the World: Contact the [[MiPNet]] laboratories: show link on the wiki, ask for updates on group, references, website, perhaps major projects ([[HypoxiaNet]]), perhaps add pictures, perhaps keywords/short description.
-As you may have seen from previous circulars, we try to draw attention to some topics on the Bioblast wiki through ‘Bioblast alert’ - http://www.bioblast.at/index.php/Bioblast_alert.  What do you think about such regular alerts?
+Circular: link to presented lab / special occasion (e.g. publication; conference presentation; new member; PhD thesis, ..
-In a next issue, we would like to present your lab as the ‘MiPNet Laboratory of the week’. If you agree, could you do the following:
-Check your lab website on the Bioblast wiki: http://www.bioblast.at/index.php/MiPNet_Reference_Laboratories
-.	Is your address and Email correct?
-.	Is your ‘Team’ listed correctly?
-.	Are your O2k-Publications complete on the list?
-.	Do you want to add any information on MiPNet Keywords and in the free text below the list of publications?
-MiPNet Laboratory of the week: Do you want to add any information for ‘Bioblast alert’? Link to your website; etc.
-Looking forward to your comments.
+[[Image:BB-Bioblast.jpg|left|40px|link=Bioblast:About|Bioblast wiki]]
+== Popular Bioblast page ==
+[[Bioblast alert]] has been accessed more than
+::::* 35,000 times (2019-12-11)
+::::* 30,000 times (2018-08-01)
+::::* 25,000 times (2015-10-28)
+::::* 20,000 times (2014-12-31)
+::::* 15,000 times (2014-06-12)
+::::* 10,000 times (2013-08-18)
+::::* 5,000 times (2012-10-22)