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O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
- » Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
- » O2k-Publications alert - » Recent O2k-Publications
- » O2k-briefs
- » O2k-Publications - chronological: 4536
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (359 entries) 359 509 2 Exercise physiology;nutrition;life style 726 1006 3 Comparative MiP;environmental MiP 315 466 4 Pharmacology;toxicology 821 983 5 mt-Biogenesis;mt-density 245 328 6 Genetic knockout;overexpression 624 692 7 Instruments;methods 268 407
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 264 402 2 Alzheimer's 69 93 3 Autism 7 11 4 Cancer 342 457 5 Cardiovascular 200 269 6 COPD 9 12 7 Diabetes 343 450 8 Inherited 62 96 9 Infectious 48 66 10 Myopathy 70 81 11 Neurodegenerative 163 228 12 Obesity 247 403 13 Parkinson's 64 101 14 Sepsis 73 83 15 Other 277 349
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 92 154 2 Cryopreservation 39 63 3 Hypoxia 107 207 4 Ischemia-reperfusion 322 428 5 Oxidative stress;RONS 572 814 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 14 21 3 Drosophila (» Hexapods) 62 81 4 Caenorhabditis elegans (» Nematodes) 24 32 5 Artemia (» Crustaceans) 11 18 6 Saccharomyces cerevisiae (» Fungi) 60 85 7 Comparative MiP 315 466
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 16 28 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 113 150 5 Hexapods insects, springtails; » Drosophila 32 41 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 24 41 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62 12 Plants 33 68 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 46 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 181 251 2 Genital 92 123 3 Heart 705 909 4 Kidney 144 176 5 Liver 628 815 6 Lung;Gill 57 78 7 Nervous system 594 714 8 Skeletal muscle 1062 1321
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 241 297 2 Endothelial;epithelial;mesothelial cell 252 287 3 Fibroblast 199 262 4 Islet cell;pancreas;thymus 53 64 5 Leukemia 22 25 6 Lymphocyte 56 74 7 Platelets 118 137 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 13 15 2 HEK 93 114 3 HeLa 37 54 4 Neuroblastoma 42 48 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 36 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 52 247 2 Intact organ 22 37 3 Living cells 1115 1256 4 Permeabilized cells 690 725 5 Permeabilized tissue 1074 1165 6 Homogenate 366 405 7 Isolated mitochondria 1229 1528 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 3 11 10 Enzyme 39 81 11 Oxidase and biochemical oxidation 38 48
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 456 583 3 Complex II;succinate dehydrogenase CII 398 544 4 Complex III CIII 298 356 5 Complex IV;cytochrome c oxidase CIV 403 478 6 Complex V;ATP synthase CV 220 265 7 mt-Inner membrane transporter 31 43 8 Marker enzyme 57 81 9 Supercomplex 47 71 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 107 11 Uncoupling protein 59 65
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 151 205 2 ATP production 80 121 3 Aerobic glycolysis 48 93 4 Amino acid 9 19 5 Calcium 102 174 6 Coupling efficiency;uncoupling 82 159 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 122 150 9 Flux control 53 85 10 Inhibitor Inhibitor kinetics 131 167 11 Ion;substrate transport 62 110 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- O2k-Potentiometry
- » O2k-Catalogue: O2k-TPP+ ISE-Module
- » O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- » TPP - O2k-Procedures: Tetraphenylphosphonium
- » Specifications: MiPNet15.08 TPP electrode
- » Poster
- » Unspecific binding of TPP+
- » TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- » O2k-Catalogue: O2k-FluoRespirometer
- » O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- » Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- » TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
112 171 13 Oxygen kinetics 103 143 14 Q-junction effect 13 56 15 Redox state 53 92 16 Substrate Fuel substrate kinetics 181 234 17 Temperature Temperature dependence 72 98 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling-control
# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total 1 P 
OXPHOS capacity
Oxidative phosphorylation capacity, saturating [ADP] 2773 2994 2 R 
ROUTINE respiration
Physiological state, living cells 852 937 3 E 
ET capacity
Maximal noncoupled respiration 1979 2081 4 L 
LEAK respiration
Resting state, non-phosphorylating respiration 2500 2651
Pathway control
# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 582 697 2 N N-pathway control state NADH-linked, level 4 2378 2521 3 S S-pathway control state Succinate-linked, level 3 1615 1714 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 151 173 5 DQ Duorquinol-linked, level 2 24 29 6 CIV Complex IV single step Ascorbate & TMPD, level 1 677 704 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1512 1566 8 Other 130 146 9 ROX 
Residual oxygen consumption
includes non-mitochondrial respiration 1453 1504
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1062 1321 2 O2k-Publications: Human heart 705 909 3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35
