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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4536


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (359 entries) 359 509
2 Exercise physiology;nutrition;life style 726 1006
3 Comparative MiP;environmental MiP 315 466
4 Pharmacology;toxicology 821 983
5 mt-Biogenesis;mt-density 245 328
6 Genetic knockout;overexpression 624 692
7 Instruments;methods 268 407


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 264 402
2 Alzheimer's 69 93
3 Autism 7 11
4 Cancer 342 457
5 Cardiovascular 200 269
6 COPD 9 12
7 Diabetes 343 450
8 Inherited 62 96
9 Infectious 48 66
10 Myopathy 70 81
11 Neurodegenerative 163 228
12 Obesity 247 403
13 Parkinson's 64 101
14 Sepsis 73 83
15 Other 277 349


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 154
2 Cryopreservation 39 63
3 Hypoxia 107 207
4 Ischemia-reperfusion 322 428
5 Oxidative stress;RONS 572 814
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1404 1993
2 Pig 88 101
3 Horse 26 33
4 Bovines 23 75
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1313 1538
9 Rat 862 1111
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 52 83
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 21
3 Drosophila Hexapods) 62 81
4 Caenorhabditis elegans Nematodes) 24 32
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 60 85
7 Comparative MiP 315 466


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 16 28
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 113 150
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 24 41
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 33 68
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 46
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 181 251
2 Genital 92 123
3 Heart 705 909
4 Kidney 144 176
5 Liver 628 815
6 Lung;Gill 57 78
7 Nervous system 594 714
8 Skeletal muscle 1062 1321


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 241 297
2 Endothelial;epithelial;mesothelial cell 252 287
3 Fibroblast 199 262
4 Islet cell;pancreas;thymus 53 64
5 Leukemia 22 25
6 Lymphocyte 56 74
7 Platelets 118 137
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 93 114
3 HeLa 37 54
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 36
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 52 247
2 Intact organ 22 37
3 Living cells 1115 1256
4 Permeabilized cells 690 725
5 Permeabilized tissue 1074 1165
6 Homogenate 366 405
7 Isolated mitochondria 1229 1528
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 81
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 456 583
3 Complex II;succinate dehydrogenase CII 398 544
4 Complex III CIII 298 356
5 Complex IV;cytochrome c oxidase CIV 403 478
6 Complex V;ATP synthase CV 220 265
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 81
9 Supercomplex 47 71
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 107
11 Uncoupling protein 59 65


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 151 205
2 ATP production 80 121
3 Aerobic glycolysis 48 93
4 Amino acid 9 19
5 Calcium 102 174
6 Coupling efficiency;uncoupling 82 159
7 Cyt c Cytochrome c 42 56
8 Fatty acid FA substrate kinetics 122 150
9 Flux control 53 85
10 Inhibitor Inhibitor kinetics 131 167
11 Ion;substrate transport 62 110
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


112 171
13 Oxygen kinetics 103 143
14 Q-junction effect 13 56
15 Redox state 53 92
16 Substrate Fuel substrate kinetics 181 234
17 Temperature Temperature dependence 72 98
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 55 70


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2773 2994
2 R ROUTINE ROUTINE respiration Physiological state, living cells 852 937
3 E ET ET capacity Maximal noncoupled respiration 1979 2081
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2500 2651


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 582 697
2 N N-pathway control state NADH-linked, level 4 2378 2521
3 S S-pathway control state Succinate-linked, level 3 1615 1714
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 151 173
5 DQ Duorquinol-linked, level 2 24 29
6 CIV Complex IV single step Ascorbate & TMPD, level 1 677 704
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1512 1566
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1453 1504


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1062 1321
2 O2k-Publications: Human heart 705 909
3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4536 4536
2 TIP2k 44 44
3 O2k-Fluorometry 331 336
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


53 57
7 Ca2+ O2k-ISE Module 10 10
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 79
9 Theoretical background 13 69
10 Instruments;methods 268 407
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35