O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3810


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (354 entries) 354 483
2 Exercise physiology;nutrition;life style 636 882
3 Comparative MiP;environmental MiP 293 430
4 Pharmacology;toxicology 680 814
5 mt-Biogenesis;mt-density 232 306
6 Genetic knockout;overexpression 512 570
7 Instruments;methods 212 317


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 230 356
2 Alzheimer's 60 81
3 Autism 3 7
4 Cancer 300 398
5 Cardiovascular 153 219
6 COPD 8 11
7 Diabetes 297 397
8 Inherited 60 81
9 Infectious 36 48
10 Myopathy 55 66
11 Neurodegenerative 145 200
12 Obesity 202 342
13 Parkinson's 52 83
14 Sepsis 61 71
15 Other 227 295


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 87 144
2 Cryopreservation 34 57
3 Hypoxia 73 105
4 Ischemia-reperfusion 291 393
5 Oxidative stress;RONS 528 734
6 Permeability transition 66 87
7 Temperature: hypothermia; hyperthermia 86 103


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1202 1706
2 Pig 79 91
3 Horse 23 29
4 Bovines 21 63
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 21
8 Mouse 1076 1274
9 Rat 770 992
10 Guinea pig 21 34
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 50 65
4 Caenorhabditis elegans Nematodes) 19 27
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 72
7 Comparative MiP 293 430


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 100 130
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 18 28
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 30 42
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 39
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 152 213
2 Genital 81 110
3 Heart 612 793
4 Kidney 118 146
5 Liver 546 704
6 Lung;Gill 48 63
7 Nervous system 507 607
8 Skeletal muscle 922 1137


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 218 268
2 Endothelial;epithelial;mesothelial cell 220 250
3 Fibroblast 170 216
4 Islet cell;pancreas;thymus 45 55
5 Leukemia 22 25
6 Lymphocyte 48 62
7 Platelets 102 120
8 Stem cells 30 40


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 73 91
3 HeLa 29 42
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 24 33
7 Other cells and cell lines 268 305


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 42 211
2 Intact organ 21 34
3 Living cells 934 1033
4 Permeabilized cells 558 589
5 Permeabilized tissue 933 1017
6 Homogenate 292 327
7 Isolated mitochondria 1076 1345
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 39 68
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 426 510
3 Complex II;succinate dehydrogenase CII 376 445
4 Complex III CIII 287 331
5 Complex IV;cytochrome c oxidase CIV 387 454
6 Complex V;ATP synthase CV 208 246
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 50 71
9 Supercomplex 41 54
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 75 95
11 Uncoupling protein 57 62


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 190
2 ATP production 71 104
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 88 133
6 Coupling efficiency;uncoupling 71 132
7 Cyt c Cytochrome c 38 47
8 Fatty acid FA substrate kinetics 116 140
9 Flux control 46 73
10 Inhibitor Inhibitor kinetics 127 155
11 Ion;substrate transport 54 94
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


96 146
13 Oxygen kinetics 96 127
14 Q-junction effect 6 7
15 Redox state 45 70
16 Substrate Fuel substrate kinetics 175 227
17 Temperature Temperature dependence 59 82
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 52 68


Coupling-control states

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2324 2520
2 R ROUTINE ROUTINE respiration Physiological state, living cells 705 764
3 E ET ET capacity Maximal noncoupled respiration 1609 1693
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2006 2134


Pathway control states

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 482 576
2 N N-pathway control state NADH-linked, level 4 1960 2080
3 S S-pathway control state Succinate-linked, level 3 1312 1383
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 123 141
5 DQ Duorquinol-linked, level 2 17 21
6 CIV Complex IV single step Ascorbate & TMPD, level 1 556 582
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1217 1263
8 Other 123 139
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1122 1164


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 922 1137
2 O2k-Publications: Human heart 612 793
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3810 3810
2 TIP2k 41 41
3 O2k-Fluorometry 245 251
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 7 7
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


47 51
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 61 77
9 Theoretical background 12 66
10 Instruments;methods 212 317
11 O2k-Fluorometry - Fluorophores 19 19
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 26 32