Komlodi 2022 MitoFit ROS review
From Bioblast
| KomlĂłdi T, Gnaiger E (2022) Discrepancy on oxygen dependence of ROS production - review. MitoFit Preprints 2022 (in prep). |
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References
| Link | View | Reference | Year |
|---|---|---|---|
| Archer 1993 Circ Res | PMID:8222081 Open Access | Archer SL, Huang J, Henry T, Peterson D, Weir EK (1993) A redox-based O2 sensor in rat pulmonary vasculature. Circ Res 73:1100-12. | 1993 |
| Arias-Mayenco 2018 Cell Metab | PMID:29887397 Open Access | Arias-Mayenco I, GonzĂĄlez-RodrĂguez P, Torres-Torrelo H, Gao L, FernĂĄndez-AgĂŒera MC, Bonilla-Henao V, Ortega-SĂĄenz P, LĂłpez-Barneo J (2018) Acute O2 Sensing: role of coenzyme QH2/Q ratio and mitochondrial ROS compartmentalization. Cell Metab 28:145-158. | 2018 |
| Ast 2019 Nat Metab | PMID:32694740 | Ast T, Mootha VK (2019) Oxygen and mammalian cell culture: are we repeating the experiment of Dr. Ox? Nat Metab 1:858-860. | 2019 |
| Becker 1999 Am J Physiol | PMID:10600842 Open Access | Becker LB, Vanden Hoek TL, Shao ZH, Li CQ, Schumacker PT (1999) Generation of superoxide in cardiomyocytes during ischemia before reperfusion. Am J Physiol 277:2240-6. | 1999 |
| Boveris 1973 Biochem J | PMID: 4749271 Open Access | Boveris A, Chance B (1973) The mitochondrial generation of hydrogen peroxide. General properties and effect of hyperbaric oxygen. Biochem J 134:707-16. | 1973 |
| Brueckl 2006 Am J Respir Cell Mol Biol | PMID:16357365 Open Access | Brueckl C, Kaestle S, Kerem A, Habazettl H, Krombach F, Kuppe H, Kuebler WM (2006) Hyperoxia-induced reactive oxygen species formation in pulmonary capillary endothelial cells in situ. Am J Respir Cell Mol Biol 34:453-63. | 2006 |
| Carreau 2011 J Cell Mol Med | J Cell Mol Med 15:1239-53. PMID:21251211 Open Access | Carreau A, El Hafny-Rahbi B, Matejuk A, Grillon C, Kieda C (2011) Why is the partial oxygen pressure of human tissues a crucial parameter? Small molecules and hypoxia. https://doi.org/10.1111/j.1582-4934.2011.01258.x | 2011 |
| Chandel 1998 Proc Natl Acad Sci | PMID:9751731 Open Access | Chandel NS, Maltepe E, Goldwasser E, Mathieu CE, Simon MC, Schumacker PT (1998) Mitochondrial reactive oxygen species trigger hypoxia-induced transcription. Proc Natl Acad Sci 95:11715-20. | 1998 |
| Chandel 2000 J Biol Chem | PMID:10833514 Open Access | Chandel NS, McClintock DS, Feliciano CE, Wood TM, Melendez JA, Rodriguez AM, Schumacker PT (2000) Reactive oxygen species generated at mitochondrial complex III stabilize hypoxia-inducible factor-1alpha during hypoxia: a mechanism of O2 sensing. J Biol Chem 275:25130-8. | 2000 |
| Cobley 2017 Redox Biol | PMID:28371751 Open Access | Cobley JN, Close GL, Bailey DM, Davison GW (2017) Exercise redox biochemistry: Conceptual, methodological and technical recommendations. Redox Biol 12:540-548. | 2017 |
| Dikalov 2014 Antioxid Redox Signal | PMID: 22978713 Open Access | Dikalov SI, Harrison DG (2014) Methods for detection of mitochondrial and cellular reactive oxygen species. Antioxid Redox Signal 20:372â82. | 2014 |
| Dirmeier 2002 J Biol Chem | Open Access | Dirmeier R, O'Brien KM, Engle M, Dodd A, Spears E, Poyton RO (2002) Exposure of yeast cells to anoxia induces transient oxidative stress. Implications for the induction of hypoxic genes. J Biol Chem 277:34773-84. | 2002 |
| Duong 2020 Mitochondrion | PMID: 31982614 | Duong QV, Hoffman A, Zhong K, Dessinger MJ, Zhang Y, Bazil JN (2020) Calcium overload decreases net free radical emission in cardiac mitochondria. Mitochondrion 51:126-39. | 2020 |
| Duranteau 1998 J Biol Chem | PMID:9565580 Open Access | Duranteau J, Chandel NS, Kulisz A, Shao Z, Schumacker PT (1998) Intracellular signaling by reactive oxygen species during hypoxia in cardiomyocytes. J Biol Chem 273:11619-24. | 1998 |
| Gnaiger 2003 Adv Exp Med Biol |  Adv Exp Med Biol 543:39-55. PMID: 14713113 | Gnaiger E (2003) Oxygen conformance of cellular respiration. A perspective of mitochondrial physiology. https://doi.org/10.1007/978-1-4419-8997-0_4 | 2003 |
| Gnaiger 1995 J Bioenerg Biomembr | J Bioenerg Biomembr 27:583-96. PMID: 8746845 | Gnaiger E, Steinlechner-Maran R, MĂ©ndez G, Eberl T, Margreiter R (1995) Control of mitochondrial and cellular respiration by oxygen. https://doi.org/10.1007/BF02111656 | 1995 |
| Grivennikova 2018 Redox Biol | PMID:29702406 Open Access | Grivennikova VG, Kareyeva AV, Vinogradov AD (2018) Oxygen-dependence of mitochondrial ROS production as detected by Amplex Red assay. Redox Biol 17:192-9. | 2018 |
| Guzy 2005 Cell Metab | PMID: 16054089 Open Access | Guzy RD, Hoyos B, Robin E, Chen H, Liu L, Mansfield KD, Simon MC, Hammerling U, Schumacker PT (2005) Mitochondrial complex III is required for hypoxia-induced ROS production and cellular oxygen sensing. Cell Metab 1:401-8. | 2005 |
| Guzy 2007 Antioxid Redox Signal | PMID:17627464 | Guzy RD, Mack MM, Schumacker PT (2007) Mitochondrial complex III is required for hypoxia-induced ROS production and gene transcription in yeast. Antioxid Redox Signal 9:1317-28. | 2007 |
| He 2005 Am J Physiol Lung Cell Mol Physiol | PMID:16280459 Open Access | He L, Dinger B, Sanders K, Hoidal J, Obeso A, Stensaas L, Fidone S, Gonzalez C (2005) Effect of p47phox gene deletion on ROS production and oxygen sensing in mouse carotid body chemoreceptor cells. Am J Physiol Lung Cell Mol Physiol 289:916-24. | 2005 |
| Hernansanz-AgustĂn 2014 Free Radic Biol Med | PMID: 24637263 | Hernansanz-Agustin P, Izquierdo-Ălvarez A, SĂĄnchez-GĂłmez FJ, Ramos E, Villa-Piña T, Lamas S, Bogdanova A, MartĂnez-Ruiz A (2014) Acute hypoxia produces a superoxide burst in cells. Free Radic Biol Med 71:146-56. | 2014 |
| Hoffman 2009 J Biol Chem | PMID: 19366681 Open Access | Hoffman DL, Brookes PS (2009) Oxygen sensitivity of mitochondrial reactive oxygen species generation depends on metabolic conditions. J Biol Chem 284:16236-45. | 2009 |
| Hoffman 2007 Am J Physiol Heart Circ Physiol | PMID:16963616 Open Access | Hoffman DL, Salter JD, Brookes PS (2007) Response of mitochondrial reactive oxygen species generation to steady-state oxygen tension: implications for hypoxic cell signaling. Am J Physiol Heart Circ Physiol 292:H101-8. | 2007 |
| Jones 1986 Am J Physiol | PMID:3010727 | Jones DP (1986) Intracellular diffusion gradients of O2 and ATP. Am J Physiol 250:C663-75. | 1986 |
| Kaludercic 2014 Front Physiol | PMID:25161621 Open Access | Kaludercic N, Deshwal S, Di Lisa F (2014) Reactive oxygen species and redox compartmentalization. Front Physiol 5:285. | 2014 |
| Kalyanaraman 2012 Free Radical Biol Med | PMID:22027063 Open Access | Kalyanaraman B, Darley-Usmar V, Davies KJA, Dennery PA, Forman HJ, Grisham MB, Mann GE, Moore K, Roberts LJ 2nd, Ischiropoulos H (2012) Measuring reactive oxygen and nitrogen species with fluorescent probes: challenges and limitations. Free Radical Biol Med 52:1-6. | 2012 |
| Keeley 2019 Physiol Rev | Physiol Rev 99:161-234. PMID:30354965 Open Access | Keeley TP, Mann GE (2019) Defining physiological normoxia for improved translation of cell physiology to animal models and humans. https://doi.org/10.1152/physrev.00041.2017 | 2019 |
| Killilea 2000 Am J Physiol Lung Cell Mol Physiol | PMID:10926565 Open Access | Killilea DW, Hester R, Balczon R, Babal P, Gillespie MN (2000) Free radical production in hypoxic pulmonary artery smooth muscle cells. Am J Physiol Lung Cell Mol Physiol 279:408-12. | 2000 |
| Komlodi 2018 Methods Mol Biol | PMID:29850998 | Komlodi T, Sobotka O, Krumschnabel G, Bezuidenhout N, Hiller E, Doerrier C, Gnaiger E (2018) Comparison of mitochondrial incubation media for measurement of respiration and hydrogen peroxide production. Methods Mol Biol 1782:137-55. | 2018 |
| Komlodi 2021 BEC AmR-O2 | Bioenerg Commun 2021.4.  published online 2021-12-21
| KomlĂłdi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. https://doi.org/10.26124/bec:2021-0004 | 2021 |
| Kudin 2004 J Biol Chem | PMID: 14625276 Open Access | Kudin AP, Bimpong-Buta NY, Vielhaber S, Elger CE, Kunz WS (2004) Characterization of superoxide-producing sites in isolated brain mitochondria. J Biol Chem 279:4127-35. | 2004 |
| Kussmaul 2006 Proc Natl Acad Sci | PMID:16682634 Open Access | Kussmaul L, Hirst J (2006) The mechanism of superoxide production by NADH:ubiquinone oxidoreductase (complex I) from bovine heart mitochondria. Proc Natl Acad Sci 103:7607-12. | 2006 |
| LeBel 1992 Chem Res Toxicol | PMID:1322737 Open Access | LeBel CP, Ischiropoulos H, Bondy SC (1992) Evaluation of the probe 2',7'-dichlorofluorescin as an indicator of reactive oxygen species formation and oxidative stress. Chem Res Toxicol 5:227-31. | 1992 |
| Li 2016 Sci Rep | PMID: 27465434 Open Access | Li N, Guenancia C, Rigal E, Hachet O, Chollet P, Desmoulins L, Leloup C, Rochette L, Vergely C (2016) Short-term moderate diet restriction in adulthood can reverse oxidative, cardiovascular and metabolic alterations induced by postnatal overfeeding in mice. Sci Rep 6:30817 | 2016 |
| Li Puma 2020 Am J Physiol Regul Integr Comp Physiol | PMID: 32233925 » | Li Puma LC, Hedges M, Heckman JM, Mathias AB, Engstrom MR, Brown AB, Chicco AJ (2020) Experimental oxygen concentration influences rates of mitochondrial hydrogen peroxide release from cardiac and skeletal muscle preparations. Am J Physiol Regul Integr Comp Physiol 318:972-80. | 2020 |
| Liu 2003 Am J Physiol Lung Cell Mol Physiol | PMID:12665465 Open Access | Liu JQ, Sham JSK, Shimoda LA, Kuppusamy P, Sylvester JT (2003) Hypoxic constriction and reactive oxygen species in porcine distal pulmonary arteries. Am J Physiol Lung Cell Mol Physiol 285:322-33. | 2003 |
| Loor 2011 Biochim Biophys Acta | PMID:21185334 Open Access | Loor G, Kondapalli J, Iwase H, Chandel NS, Waypa GB, Guzy RD, Vanden Hoek TL, Schumacker PT (2011) Mitochondrial oxidant stress triggers cell death in simulated ischemia-reperfusion. Biochim Biophys Acta 1813:1382-94. | 2011 |
| Mansfield 2005 Cell Metab | Open Access | Mansfield KD, Guzy RD, Pan Y, Young RM, Cash TP, Schumacker PT, Simon MC (2005) Mitochondrial dysfunction resulting from loss of cytochrome c impairs cellular oxygen sensing and hypoxic HIF-alpha activation. Cell Metab 1:393-9. | 2005 |
| Marshall 1996 Am J Respir Cell Mol Biol | PMID:8918370 | Marshall C, Mamary AJ, Verhoeven AJ, Marshall BE (1996) Pulmonary artery NADPH-oxidase is activated in hypoxic pulmonary vasoconstriction. Am J Respir Cell Mol Biol 15:633-44. | 1996 |
| McKeown 2014 Br J Radiol | Br J Radiol 87:20130676. PMID:24588669 Open Access | McKeown SR (2014) Defining normoxia, physoxia and hypoxia in tumours-implications for treatment response. https://doi.org/10.1259/bjr.20130676 | 2014 |
| Mehta 2008 Chest | PMID:18339777 Open Access | Mehta JP, Campian JL, Guardiola J, Cabrera JA, Weir EK, Eaton JW (2008) Generation of oxidants by hypoxic human pulmonary and coronary smooth-muscle cells. Chest 1410-1414. | 2008 |
| NÀpÀnkangas 2012 J Mol Cell Cardiol | PMID: 23036824 | NÀpÀnkangas JP, Liimatta EV, Joensuu P, Bergmann U, Ylitalo K, Hassinen IE (2012) Superoxide production during ischemia-reperfusion in the perfused rat heart: a comparison of two methods of measurement. J Mol Cell Cardiol 53:906-15. | 2012 |
| Paniker 1970 Biochim Biophys Acta | PMID:5507367 | Paniker NV, Srivastava SK, Beutler E (1970) Glutathione metabolism of the red cells. Effect of glutathione reductase deficiency on the stimulation of hexose monophosphate shunt under oxidative stress. Biochim Biophys Acta 215:456-60. | 1970 |
| Pesta 2012 Methods Mol Biol | PMID: 22057559
 | Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_3 | 2012 |
| Robb 2018 J Biol Chem | PMID: 29743240 Open Access | Robb EL, Hall AR, Prime TA, Eaton S, Szibor M, Viscomi C, James AM, Murphy MP (2018) Control of mitochondrial superoxide production by reverse electron transport at complex I. J Biol Chem 293:9869-79. https://doi.org/10.1074/jbc.RA118.003647 | 2018 |
| SanjuĂĄn-Pla 2005 FEBS Lett | PMID:15862307 Open Access | Sanjuan-Pla A, Cervera AM, Apostolova N, Garcia-Bou R, Victor VM, Murphy MP, McCreath KJ (2005) A targeted antioxidant reveals the importance of mitochondrial reactive oxygen species in the hypoxic signaling of HIF-1alpha. FEBS Lett 579:2669-74. | 2005 |
| Schroedl 2002 Am J Physiol Lung Cell Mol Physiol | PMID:12376345 Open Access | Schroedl C, McClintock DS, Budinger GRS, Chandel NS (2002) Hypoxic but not anoxic stabilization of HIF-1alpha requires mitochondrial reactive oxygen species. Am J Physiol Lung Cell Mol Physiol 283:922-31. | 2002 |
| Sies 1997 Exp Physiol | PMID:9129943 Open Access | Sies H (1997) Oxidative stress: oxidants and antioxidants. Exp Physiol 82:291-5. | 1997 |
| Sies 2021 Redox Biol | PMID:33657525 Open Access | Sies H (2021) Oxidative eustress: On constant alert for redox homeostasis. Redox Biol 41:101867. | 2021 |
| Sies 2020 Nat Rev Mol Cell Biol | PMID:32231263 | Sies H, Jones DP (2020) Reactive oxygen species (ROS) as pleiotropic physiological signalling agents. Nat Rev Mol Cell Biol 21:363-83. | 2020 |
| Stepanova 2020 Methods Cell Biol | Methods Cell Biol 155:273-93. PMID: 32183962 | Stepanova A, Galkin A (2020) Measurement of mitochondrial H2O2 production under varying O2 tensions. https://doi.org/10.1016/bs.mcb.2019.12.008 | 2020 |
| Stepanova 2017 J Cereb Blood Flow Metab | PMID: 28914132 | Stepanova A, Kahl A, Konrad C, Ten V, Starkov AS, Galkin A (2017) Reverse electron transfer results in a loss of flavin from mitochondrial complex I: Potential mechanism for brain ischemia-reperfusion injury. J Cereb Blood Flow Metab 37:3649-58. | 2017 |
| Stepanova 2018 J Cereb Blood Flow Metab | PMID: 29629602 | Stepanova A, Konrad C, Guerrero-Castillo S, Manfredi G, Vannucci S, Arnold S, Galkin A (2018) Deactivation of mitochondrial complex I after hypoxia-ischemia in the immature brain. J Cereb Blood Flow Metab 39:1790-802. | 2018 |
| Stepanova 2018 J Neurochem | PMID: 30582748 | Stepanova A, Konrad C, Manfredi G, Springett R, Ten V, Galkin A (2018) The dependence of brain mitochondria reactive oxygen species production on oxygen level is linear, except when inhibited by antimycin A. J Neurochem 148:731-45. | 2018 |
| Stuart 2018 Oxid Med Cell Longev | PMID:30363917 | Stuart JA, Fonseca JF, Moradi F, Cunningham C, Seliman B, Worsfold CR, Dolan S, Abando J, Maddalena LA (2018) How Supraphysiological Oxygen Levels in Standard Cell Culture Affect Oxygen-Consuming Reactions. Oxid Med Cell Longev 2018:8238459. | 2018 |
| Szibor 2020 J Cell Mol Med | PMID: 32040259 Open Access » | Szibor M, Schreckenberg R, Gizatullina Z, Dufour E, Wiesnet M, Dhandapani PK, Debska-Vielhaber G, Heidler J, Wittig I, Nyman TA, Gaertner U, Hall AR, Pell V, Viscomi C, Krieg T, Murphy MP, Braun T, Gellerich FN, Schlueter KD, Jacobs HT(2020) Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia. J Cell Mol Med 24:3534-48. | 2020 |
| Tarpey 2001 Circ Res | PMID:11485972 Open Access | Tarpey MM, Fridovich I (2001) Methods of detection of vascular reactive species: nitric oxide, superoxide, hydrogen peroxide, and peroxynitrite. Circ Res 89:224-36. | 2001 |
| Turrens 1982 Arch Biochem Biophys | PMID:7138014 | Turrens JF, Freeman BA, Crapo JD (1982) Hyperoxia increases H2O2 release by lung mitochondria and microsomes. Arch Biochem Biophys 217:411-21. | 1982 |
| Vanden Hoek 1997 J Mol Cell Cardiol | PMID:9299379 | Vanden Hoek TL, Li C, Shao Z, Schumacker PT, Becker LB (1997) Significant levels of oxidants are generated by isolated cardiomyocytes during ischemia prior to reperfusion. J Mol Cell Cardiol 29:2571-83. | 1997 |
| Vaux 2001 Blood | Open Access | Vaux EC, Metzen E, Yeates KM, Ratcliffe PJ (2001) Regulation of hypoxia-inducible factor is preserved in the absence of a functioning mitochondrial respiratory chain. Blood 98(2):296-302. | 2001 |
| VĂĄsquez-Vivar 1997 FEBS Letters | PMID:9042951 Open Access | VĂĄsquez-Vivar J, Hogg N, Pritchard Jr KA, Martasek P, Kalyanaraman B (1997) Superoxide anion formation from lucigenin: an electron spin resonance spin-trapping study. FEBS Letters 403:127-30. | 1997 |
| Waypa 2001 Circ Res | PMID:11420302 Open Access | Waypa GB, Chandel NS, Schumacker PT (2001) Model for Hypoxic Pulmonary Vasoconstriction Involving Mitochondrial Oxygen Sensing. Circ Res 88:1259â1266. | 2001 |
| Waypa 2010 Circ Res | PMID:20019331 Open Access | Waypa GB, Marks JD, Guzy R, Mungai PT, Schriewer J, Dokic D, Schumacker PT (2010) Hypoxia triggers subcellular compartmental redox signaling in vascular smooth muscle cells. Circ Res 106:526-35. | 2010 |
| Waypa 2013 Am J Respir Crit Care Med | PMID:23328522 Open Access | Waypa GB, Marks JD, Guzy RD, Mungai PT, Schriewer JM, Dokic D, Ball MK, Schumacker PT (2013) Superoxide generated at mitochondrial complex III triggers acute responses to hypoxia in the pulmonary circulation. Am J Respir Crit Care Med 187:424-32. | 2013 |
| Wu 2007 Am J Physiol Lung Cell Mol Physiol | PMID:17693484 Open Access | Wu W, Platoshyn O, Firth AL, Yuan XJ (2007) Hypoxia divergently regulates production of reactive oxygen species in human pulmonary and coronary artery smooth muscle cells. Am J Physiol Lung Cell Mol Physiol 293:L952-9. | 2007 |
| Zielonka 2010 Free Radic Biol Med | PMC3587154 Open Access | Zielonka J, KalyanaramanB (2010) Hydroethidine- and Mito-SOX-derived red fluorescence is not a reliable indicator of intracellular superoxide formation: Another inconvenient truth. Free Radic Biol Med 48:983â1001. | 2010 |
