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Difference between revisions of "MiPNet20.12 IOC103 Manaus"

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{{Publication
{{Publication
|title=[[Image:O2k-Network.png|right|60px|link=O2k-Network|O2k-Network]]  
|title=[[Image:O2k-Network.png|right|60px|link=O2k-Network|O2k-Network]]  
'''Manaus BR''', 2015 Jul 06-07. To the heart of the Amazon. O2k-Workshop on HRR and O2k-Fluorometry, '''IOC103'''.
'''Manaus BR''', 2015 Jul 06-10. To the heart of the Amazon. O2k-Workshop on HRR and O2k-Fluorometry, '''IOC103'''.
|authors=OROBOROS
|authors=OROBOROS
|year=2015-07-06
|year=2015-07-06
|journal=Mitochondr Physiol Network
|journal=Mitochondr Physiol Network
|abstract=[[File:Arapaima 4510.JPG |left|350px|Arapaima, Pirarucu, or Paiche]]
|abstract=[[File:Arapaima 4515.JPG |left |350px |Arapaima, Pirarucu, or Paiche, Manaus]]
2015 Jul 06-07. '''To the heart of the Amazon: comparative cardiac mitochondrial physiology of Amazon fish.''' O2k-Workshop on HRR and start-up project, IOC103.
'''2015 Jul 06-10. To the heart of the Amazon: comparative cardiac mitochondrial physiology of Amazon fish. O2k-Workshop on HRR and start-up project, IOC103.'''
|mipnetlab=BR Manaus Val AL, AT Innsbruck OROBOROS
|mipnetlab=BR Manaus Val AL, AT Innsbruck OROBOROS
}}
}}
{{Labeling
{{Labeling
|instruments=Oxygraph-2k
|instruments=Oxygraph-2k
|additional=ORO, IOC, MiPNet, 2015, Next
|additional=ORO, IOC, PBI-Shredder, O2k-Network, 2015
}}
}}
[[File:Amazon 4403.JPG |left |240px |file=MiPNet20.12 IOC103|Amazon, Manaus]]
[[File:Amazon 4403.JPG |left |240px |Amazon, Manaus]]
<big><big>'''To the heart of the Amazon'''</big></big>
<big><big>'''To the heart of the Amazon'''</big></big>


Mitochondrial function is compared in mitochondrial preparations of fish heart. According to the suggestion by Dr. Adalberto Luis Val, one of each of the major groups should be selected: Potamotrygonidae, Osteoglossidae, Characiformes, Siluriformes, Perciformes (Cichlidae). The results obtained with a basic [[SUIT protocol]] will be compared with mitochondrial respiratory control patterns in other species, including human and mouse heart mitochondria. This study explores evolutionary variations of mitochondrial respiratory control patterns in different species, to define mitochondrial fitness in terms of adaptations to different environments and life styles. The results may provide a key towards delineating mitochondrial respiratory control patterns in health in different species and tissues, as a basis to classify mitochondrial risk factors as causes and consequences of disease.
Mitochondrial function is compared in mitochondrial preparations of fish heart. According to the suggestion by Dr. Adalberto Luis Val, one of each of the major groups should be selected: Potamotrygonidae, Osteoglossidae, Characiformes, Siluriformes, Perciformes (Cichlidae). The results obtained with a basic [[SUIT protocol]] will be compared with mitochondrial respiratory control patterns in other species, including human and mouse heart mitochondria. This study explores evolutionary variations of mitochondrial respiratory control patterns in different species, to define mitochondrial fitness in terms of adaptations to different environments and life styles. The results may provide a key towards delineating mitochondrial respiratory control patterns in health in different species and tissues, as a basis to classify mitochondrial risk factors as causes and consequences of disease.
 
<br />
<br />
[[Image:The world as a laboratory.jpg|right|180px|link=http://wiki.oroboros.at/index.php/The_world_as_a_laboratory|Science and adventure]]
__TOC__
__TOC__
== Venue and organization ==
== Venue and organization ==
Line 56: Line 58:


High reproducibility of mitochondrial respiratory control in cardiac tissue from Tambaqui.
High reproducibility of mitochondrial respiratory control in cardiac tissue from Tambaqui.
 
<br />
 
<br />
<br />
=== Tambaqui ===
=== Tambaqui ===
[[File:Tambaqui 4447.JPG|left|300px]] Tambaqui, ''Colossoma macropomum''.
[[File:Tambaqui 4447.JPG|left|300px]] Tambaqui, ''Colossoma macropomum''.
<gallery>
<br />
<gallery mode=packed widths="240px" heights="200px">
File:IOC103 0289.JPG|The O2k is set up in the seminar room for the training and pilot project.
File:IOC103 0289.JPG|The O2k is set up in the seminar room for the training and pilot project.
File:IOC103 0411.JPG|Preparation of chemicals.
File:IOC103 0411.JPG|Preparation of chemicals.
Line 74: Line 78:
File:IOC103 0289.JPG|The homogenate (5 ml) is distributed at alternating 500 µl steps into the two O2k-Chambers.
File:IOC103 0289.JPG|The homogenate (5 ml) is distributed at alternating 500 µl steps into the two O2k-Chambers.
</gallery>
</gallery>
<br />




[[File:Arapaima 4620-36.jpg |right|400px|''Arapaima gigas'', Manaus]]
=== Arapaima or Pirarucu ===
=== Arapaima or Pirarucu ===
[[File:Arapaima_4515.JPG|left|300px]]
[[File:Arapaima-mouth.jpg|left|300px |''Arapaima gigas'', Manaus]]
[[File:Arapaima 4510.JPG |left|300px|''Arapaima gigas'', Manaus]]
The Arapaima or Pirarucu is native to the Amazon, and is among the largest freshwater fish in the world (>2.5 m). As an adaptation to the seasonal hypoxic conditions, Arapaima has developed a swim bladder with lung-like function associated with air breathing.
The Arapaima or Pirarucu is native to the Amazon, and is among the largest freshwater fish in the world (>2.5 m). As an adaptation to the seasonal hypoxic conditions, Arapaima has developed a swim bladder with lung-like function associated with air breathing.
<gallery>
<br />
File:IOC103 Arapaima-heart 4534.JPG
<gallery mode=packed widths="240px" heights="200px">
File:IOC103 Arapaima-heart 4539.JPG
File:IOC103 Arapaima-heart 4534.JPG|A small sepcimen, at a developmental stage that may have just started air breathing, is selected for the pilot study.
File:IOC103 Arapaima-heart 4540.JPG
File:IOC103 Arapaima-heart 4539.JPG|The entire heart is just 20 mg wet weight.
File:IOC103 Arapaima-heart 4541.JPG
File:IOC103 Arapaima-heart 4540.JPG|The heart becomes quickly hemoglobin depleted during dissection in BIOPS.
File:IOC103 Arapaima-heart 4527.JPG
File:IOC103 Arapaima-heart 4541.JPG|The Arapaima heart has a texture different from the Tambaqui.
File:IOC103 Arapaima-Shredder 4531.JPG
File:IOC103 Arapaima-heart 4527.JPG|Ramon prepares the tissue for wet weight measurement.
File:IOC103 Arapaima-HRR 4546.JPG
File:IOC103 Arapaima-Shredder 4531.JPG|Aleicia operates the Shredder for tissue homogenization.
File:IOC103 Arapaima-HRR 4550.JPG
File:IOC103 Arapaima-HRR 4546.JPG|And Aleicia distributes the homogenate into the two O2k-Chambers.
File:IOC103 Arapaima-HRR 4552.JPG
File:IOC103 Arapaima-HRR 4550.JPG|After adding CI-linked substrates (glutamate&malate), ADP, and cytochrome ''c'', a re-oxygenation is followed by titration of pyruvate. Aleicia is just adding succinate.
File:IOC103 Arapaima-HRR 4553.JPG
File:IOC103 Arapaima-HRR 4552.JPG|Aleicia and Derek are amazed by the real-time results obtained with the O2k.
File:IOC103 Arapaima-HRR 4555.JPG
File:IOC103 Arapaima-HRR 4553.JPG|Following a re-oxygenation, the delicate uncoupler titration is started.
File:IOC103 Arapaima-HRR 4555.JPG|Ramon adds 'Events' and sets 'Marks' for real-time DatLab analysis.
</gallery>
</gallery>


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== SUIT protocol for the cardiac mitochondrial project ==
== SUIT protocol for the cardiac mitochondrial project ==
Heart homogante from various fish species will be analyzed with a basic SUIT protocol. The experimental programme is planned from July 8 to 11.
[[File:SUIT-diagram.jpg |left|300px |Substrate-coupling control diagram]]
[[File:Trout-heart 2011-10-05 A-02.jpg |800 px]]
Heart homogante from various fish species is analyzed with a basic substrate-uncoupler-inhibitor titration ([[SUIT]]) protocol. A [[SUIT protocol library |SUIT protocol library]] CI-CI<small>&</small>II-CII SUIT protocol was selected: GM +D +c +P +S +U +Rot +Ama (further details: [[MiPNet09.12 O2k-Titrations |»O2k-Titrations]].
[[File:Mouse-heart_2011-11-16_C-02.jpg |800 px]]


Trout heart homogenate (15 °C, 4 mg ''W''<sub>w</sub>/ml; 2011-10-05 A-02). Very low LEAK and ROX. No ADP limitation at D1 (1 mM) with glutamate&malate (GM), but glutamate&malate&pyruvate (GMP) was not saturated at 2 mM ADP (D2), as shown by the increase of flux when doubling the ADP concentration (4 mM; D4). No oxygen limitation. Low ''P/E'' ratio, indicating limitation of OXPHOS by the phosphorylation system. The optimum uncoupler (U; FCCP) concentration is higher than in liver homogenate (2.5 versus 1.0 µM), but 3 µM exerts already a pronounced time-dependent inhibitory effect (not due to limitation by oxygen, as shown by the lower flux after reoxygenation).
Cardiac tissue from Arapaima and Tambaqui was prepared in [[BIOPS]] on ice, 15 to 20 mg blotted wet weight were transferred into 500 µl ice cold [[MiR05Cr]] (60 mM lactobionic acid was replaced by 60 mM KCl) in the tube of the [[PBI-Shredder HRR-Set]], where the tissue was further separated by a pre-cooled pari of scissors, and tissue homogenate was prepared according to standard procedures [[MiPNet17.15 PBI-Shredder Mouse-heart-brain-liver]]. The homogenate was distributed immediately into the two 2-ml chambers of the O2k (pipetting 500 µl aliquots alernating into the two chambers, with multiple suctions between titrations). Data recording with DatLab was started when the homogenate was placed into the O2k-Chambers regulated at 28 °C, the homogenate was stirred for about 3 min with a gas phase, and the SUIT protocol was started immediately at air saturation upon closing the chamber. Oxygen levels were maintained approximately between 100 and 350 µM.


Mouse heart homogenate (37 °C) is shown for comparison.
The training programme and pilot project were conducted from July 8 to 10, 2015.
 
[[File:Arapaima 4515m.jpg |left|300px |''Arapaima gigas'', Manaus]]
[[File:Arapaima-heart 2015-07-10 P1-02B.jpg |800 px]]
 
[[File:Tambaqui 4447m.jpg |left|300px |''Colossoma macropomum'', Manaus]]
[[File:Tambaqui-heart 2015-07-09 P1-02A.jpg |800 px]]
 
[[File:Arctic-charr Koerbersee2014-IOC80(s).jpg |left|300px |Arctic charr]]
[[File:Trout-heart 2011-10-05 P1-02A.jpg |800 px]]
 
[[File:Mouse-C57BL6.jpg |left|300px |Mouse C57 BL6]]
[[File:Mouse-heart_2011-11-16_P2-02A.jpg |800 px]]
 
Trout heart homogenate (15 °C, 4 mg ''W''<sub>w</sub>/ml; 2011-10-05 P1-02A). Very low LEAK and ROX. No ADP limitation at D1 (1 mM) with glutamate&malate (GM), but glutamate&malate&pyruvate (GMP) was not saturated at 2 mM ADP (D2), as shown by the increase of flux when doubling the ADP concentration (4 mM; D4). No oxygen limitation. Low ''P/E'' ratio, indicating limitation of OXPHOS by the phosphorylation system. The optimum uncoupler (U; FCCP) concentration is higher than in liver homogenate (2.5 versus 1.0 µM), but 3 µM exerts already a pronounced time-dependent inhibitory effect (not due to limitation by oxygen, as shown by the lower flux after reoxygenation). Mouse heart homogenate (37 °C) is shown for comparison.


=== References ===
=== References ===
Line 132: Line 153:
* » [[O2k-Publications: Fishes]]
* » [[O2k-Publications: Fishes]]
* » [[MiPNet17.03 Shredder vs Fibres]]
* » [[MiPNet17.03 Shredder vs Fibres]]
=== Instrumental quality control ===
<gallery mode=packed widths="240px" heights="200px">
File:IOC103 O2-calibration-R1-over-time.jpg |O<sub>2</sub>–calibrations of the [[OroboPOS]] at air saturation (R1, 28 °C). '''A''': R1 [V] as a function of time after first calibration. '''B''': Change of R1 [%] after first calibration. Stability was better than 3%. Zero oxygen calibrations: 1.0 and 1.1% signal of the signal at air saturation (not shown). »[[MiPNet06.03 POS-calibration-SOP]]
File:205-07-10 P1-01 Instr-O2 background.jpg |Instrumental O<sub>2</sub> background test at high oxygen. »[[MiPNet19.18E O2 flux analysis]]
File:205-07-10 P1-01 Instr-O2 background-graphs.jpg |Instrumental O<sub>2</sub> background: real-time analysis in DatLab 6 of background oxygen flux (A) or residuals (B) as a function of oxygen concentration. »[[MiPNet14.06 Instrumental O2 background]]
File:IOC103 Instr-O2 background.jpg |Instrumental O<sub>2</sub> background. The stippled lines show the reference background (factory settings for calibration of the slope, 37 °C, extrapolated from the experimental 'normoxic' raange below air saturation). '''A''' and '''B''': Background oxygen flux as a function of oxygen concentration in a single background experiment (previous figures, 28 °C). '''C''': Summary of all values obtained during IOC103. These parameters (full lines) were used for final flux analysis (calibration of slope in DatLab). »[[MiPNet14.06 Instrumental O2 background]]
</gallery>


[[Image:O2k-Workshops.png|left|130px|link=O2k-Workshops|O2k-Workshops]]
[[Image:O2k-Workshops.png|left|130px|link=O2k-Workshops|O2k-Workshops]]
Line 138: Line 167:


'''»''' [[MitoPedia: Respiratory states]][[Image:P.jpg|link=OXPHOS capacity|OXPHOS]] [[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[Image:E.jpg|link=ETS capacity|ETS]] [[Image:L.jpg|link=LEAK respiration|LEAK]]  [[Image:ROX.jpg|link=Residual oxygen consumption|ROX]]
'''»''' [[MitoPedia: Respiratory states]][[Image:P.jpg|link=OXPHOS capacity|OXPHOS]] [[Image:R.jpg|link=ROUTINE respiration|ROUTINE]] [[Image:E.jpg|link=ETS capacity|ETS]] [[Image:L.jpg|link=LEAK respiration|LEAK]]  [[Image:ROX.jpg|link=Residual oxygen consumption|ROX]]


[[Image:MitoGlobal.jpg|right|80px|link=MitoGlobal|MitoGlobal]]  O2k-Workshops are listed as [[MitoGlobal Events]].[[Category:O2k-Workshops]]
[[Image:MitoGlobal.jpg|right|80px|link=MitoGlobal|MitoGlobal]]  O2k-Workshops are listed as [[MitoGlobal Events]].[[Category:O2k-Workshops]]


== Some impressions ==
== Some impressions ==
=== INPA Science forest ===
[[File:To the heart of the Amazon - Fish market.jpg |570px |Fish market, Manaus]]
[[File:INPA-Manatee 0355.JPG |240px|Manatee project]]
=== INPA Science forest and Manaus Zoo ===
[[File:INPA-Science forest 0403.JPG |240px|Piranias in a traditional hut]]
[[File:To the heart of the Amazon - Manaus Zoo.jpg |570px |Manaus Zoo]]
[[File:INPA-Turtles 0389.JPG |240px|Turtles in the forest]]
<gallery mode=packed widths="240px" heights="200px">
File:Amazon 4666.JPG
File:INPA-Manatee 0355.JPG |Manatee project
File:INPA-Science forest 0403.JPG |Piranias in a traditional hut
File:INPA-Turtles 0389.JPG |Turtles in the forest
File:Black-jaguar 4691.JPG |Black jaguar, Amazon
File:Amazon 4676.JPG |Jaguar, Amazon
</gallery>


=== Perspectives ===
=== Perspectives ===
[[File:Amazon-boat 4384.JPG |240px]]
<gallery mode=packed widths="240px" heights="200px">
[[File:Amazon-boat 4434.JPG |240px]]
File:RioNegro-Manaus 4619.JPG |Rio Negro, port of Manaus: maximum water level in July 2015, compared to 2012.
[[File:Amazon-boat 4406.JPG |240px]]
File:Amazon-boat 4384.JPG
Should we get a boat (Vendo - middle) for a MitoLab on the Amazon?
File:Amazon-boat 4434.JPG |Should we get a boat (Vendo) for a MitoLab on the Amazon?
File:Amazon-boat 4406.JPG
 
</gallery>

Revision as of 11:21, 26 January 2017

                



MiPNet20.12 IOC103 Manaus

Publications in the MiPMap
O2k-Network

Manaus BR, 2015 Jul 06-10. To the heart of the Amazon. O2k-Workshop on HRR and O2k-Fluorometry, IOC103.


OROBOROS (2015-07-06) Mitochondr Physiol Network

Abstract:

Arapaima, Pirarucu, or Paiche, Manaus

2015 Jul 06-10. To the heart of the Amazon: comparative cardiac mitochondrial physiology of Amazon fish. O2k-Workshop on HRR and start-up project, IOC103.


O2k-Network Lab: BR Manaus Val AL, AT Innsbruck OROBOROS


Labels:





HRR: Oxygraph-2k 

ORO, IOC, PBI-Shredder, O2k-Network, 2015 

Amazon, Manaus

To the heart of the Amazon

Mitochondrial function is compared in mitochondrial preparations of fish heart. According to the suggestion by Dr. Adalberto Luis Val, one of each of the major groups should be selected: Potamotrygonidae, Osteoglossidae, Characiformes, Siluriformes, Perciformes (Cichlidae). The results obtained with a basic SUIT protocol will be compared with mitochondrial respiratory control patterns in other species, including human and mouse heart mitochondria. This study explores evolutionary variations of mitochondrial respiratory control patterns in different species, to define mitochondrial fitness in terms of adaptations to different environments and life styles. The results may provide a key towards delineating mitochondrial respiratory control patterns in health in different species and tissues, as a basis to classify mitochondrial risk factors as causes and consequences of disease.

Science and adventure

Venue and organization

BR Manaus Val AL
Entrance to LEEM

Venue

Instituto Nacional de Pesquisas de Amazonia (INPA)
Laboratório de Ecofisiologia e Evolução Molecular (LEEM)
Ministerio da Ciencia e Tecnologia
Av. Andre Araujo, 2938
69067-375 Manaus, AM, Brazil



BR Manaus Val AL

Local organizers and contact






O2k-Workshop and pilot project

IOC103 0331.JPG

Day 1: Assembly of the O2k

From left to right: Erich Gnaiger, Reginaldo da Silva Oliveira, Derek Felipe Campos, Wadir Heinrichs Cardas, Ramon B Baptista.
Day 2: SUIT protocol for comparative mitochondrial physiology - a pilot experiment with 20 mg wet weight of cardiac tissue from Tambaqui (Colossoma macropomum). Tissue homogenate was prepared with the PBI Shredder.

Days 3-4: Project: Mitochondrial respiratory control pattern in Amazon fish heart.

High reproducibility of mitochondrial respiratory control in cardiac tissue from Tambaqui.


Tambaqui

Tambaqui 4447.JPG

Tambaqui, Colossoma macropomum.




Arapaima gigas, Manaus

Arapaima or Pirarucu

Arapaima gigas, Manaus
Arapaima gigas, Manaus

The Arapaima or Pirarucu is native to the Amazon, and is among the largest freshwater fish in the world (>2.5 m). As an adaptation to the seasonal hypoxic conditions, Arapaima has developed a swim bladder with lung-like function associated with air breathing.


IOC103-intro 4444.JPG

Lecturers and tutors


Participants

IOC103 4543.JPG
IOC103 4558.JPG


SUIT protocol for the cardiac mitochondrial project

Substrate-coupling control diagram

Heart homogante from various fish species is analyzed with a basic substrate-uncoupler-inhibitor titration (SUIT) protocol. A SUIT protocol library CI-CI&II-CII SUIT protocol was selected: GM +D +c +P +S +U +Rot +Ama (further details: »O2k-Titrations.

Cardiac tissue from Arapaima and Tambaqui was prepared in BIOPS on ice, 15 to 20 mg blotted wet weight were transferred into 500 µl ice cold MiR05Cr (60 mM lactobionic acid was replaced by 60 mM KCl) in the tube of the PBI-Shredder HRR-Set, where the tissue was further separated by a pre-cooled pari of scissors, and tissue homogenate was prepared according to standard procedures MiPNet17.15 PBI-Shredder Mouse-heart-brain-liver. The homogenate was distributed immediately into the two 2-ml chambers of the O2k (pipetting 500 µl aliquots alernating into the two chambers, with multiple suctions between titrations). Data recording with DatLab was started when the homogenate was placed into the O2k-Chambers regulated at 28 °C, the homogenate was stirred for about 3 min with a gas phase, and the SUIT protocol was started immediately at air saturation upon closing the chamber. Oxygen levels were maintained approximately between 100 and 350 µM.

The training programme and pilot project were conducted from July 8 to 10, 2015.

Arapaima gigas, Manaus

Arapaima-heart 2015-07-10 P1-02B.jpg

Colossoma macropomum, Manaus

Tambaqui-heart 2015-07-09 P1-02A.jpg

Arctic charr

Trout-heart 2011-10-05 P1-02A.jpg

Mouse C57 BL6

Mouse-heart 2011-11-16 P2-02A.jpg

Trout heart homogenate (15 °C, 4 mg Ww/ml; 2011-10-05 P1-02A). Very low LEAK and ROX. No ADP limitation at D1 (1 mM) with glutamate&malate (GM), but glutamate&malate&pyruvate (GMP) was not saturated at 2 mM ADP (D2), as shown by the increase of flux when doubling the ADP concentration (4 mM; D4). No oxygen limitation. Low P/E ratio, indicating limitation of OXPHOS by the phosphorylation system. The optimum uncoupler (U; FCCP) concentration is higher than in liver homogenate (2.5 versus 1.0 µM), but 3 µM exerts already a pronounced time-dependent inhibitory effect (not due to limitation by oxygen, as shown by the lower flux after reoxygenation). Mouse heart homogenate (37 °C) is shown for comparison.

References

  • On respiratory control of human heart mitochondria
Lemieux H, Semsroth S, Antretter H, Höfer D, Gnaiger E (2011) Mitochondrial respiratory control and early defects of oxidative phosphorylation in the failing human heart. Int J Biochem Cell Biol 43:1729–38. »Bioblast link«

Instrumental quality control

O2k-Workshops

Recommended IOC reading

Please click » here«

» MitoPedia: Respiratory statesOXPHOS ROUTINE ETS LEAK ROX


MitoGlobal

O2k-Workshops are listed as MitoGlobal Events.

Some impressions

Fish market, Manaus

INPA Science forest and Manaus Zoo

Manaus Zoo

Perspectives