Excel templ: Protocols: Difference between revisions
From Bioblast
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===Short names and notes=== | ===Short names and notes=== | ||
{| class="wikitable" | {| class="wikitable" | ||
! style="font-size:10px | ! style="font-size:10px;" | DLP# | ||
! style="font-size:10px; background-color:#efefef; color:#333333;" | Short name | |||
! style="font-size:10px; background-color:# | ! style="font-size:10px; background-color:#efefef; color:#333333;" | Notes | ||
! style="font-size:10px; background-color:# | |||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D003 | ||
| style="font-size:10px;" | RP1_pce | | style="font-size:10px;" | RP1_pce | ||
| style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D004 | ||
| style="font-size:10px;" | RP1_PBMC-PLT | | style="font-size:10px;" | RP1_PBMC-PLT | ||
| style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D001 | ||
| style="font-size:10px;" | RP1_mt | | style="font-size:10px;" | RP1_mt | ||
| style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D002 | ||
| style="font-size:10px;" | RP1_pfi | | style="font-size:10px;" | RP1_pfi | ||
| style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D007 | ||
| style="font-size:10px;" | RP2_pce | | style="font-size:10px;" | RP2_pce | ||
| style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D007a | ||
| style="font-size:10px;" | RP2_PBMC-PLT | | style="font-size:10px;" | RP2_PBMC-PLT | ||
| style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D005 | ||
| style="font-size:10px;" | RP2_mt | | style="font-size:10px;" | RP2_mt | ||
| style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D006 | ||
| style="font-size:10px;" | RP2_pfi | | style="font-size:10px;" | RP2_pfi | ||
| style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | | style="font-size:10px;" | A: Doerrier 2018 Methods Mol Biol | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D009 | ||
| style="font-size:10px;" | CCP-ce | | style="font-size:10px;" | CCP-ce | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D012 | ||
| style="font-size:10px;" | CCP-ce_+P | | style="font-size:10px;" | CCP-ce_+P | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D028 | ||
| style="font-size:10px;" | CCP-ce_+S | | style="font-size:10px;" | CCP-ce_+S | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D037 | ||
| style="font-size:10px;" | CCP-ce_+Glc+(Omy) | | style="font-size:10px;" | CCP-ce_+Glc+(Omy) | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D038 | ||
| style="font-size:10px;" | CCP-ce_+(Omy)+Glc | | style="font-size:10px;" | CCP-ce_+(Omy)+Glc | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D039 | ||
| style="font-size:10px;" | CCP-ce_+(Omy) | | style="font-size:10px;" | CCP-ce_+(Omy) | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D050 | ||
| style="font-size:10px;" | CCP-ce_+Snv+(Omy) | | style="font-size:10px;" | CCP-ce_+Snv+(Omy) | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D060 | ||
| style="font-size:10px;" | CCP-ce_+(Omy)+Snv+Mnanv | | style="font-size:10px;" | CCP-ce_+(Omy)+Snv+Mnanv | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D061 | ||
| style="font-size:10px;" | CCP-ce_+(Omy)+DMSO+DMSO | | style="font-size:10px;" | CCP-ce_+(Omy)+DMSO+DMSO | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D062 | ||
| style="font-size:10px;" | CCP-ce_+DMSO+(Omy) | | style="font-size:10px;" | CCP-ce_+DMSO+(Omy) | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D013 | ||
| style="font-size:10px;" | CCP-ce_+Glc+M+viability+CIV | | style="font-size:10px;" | CCP-ce_+Glc+M+viability+CIV | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D018 | ||
| style="font-size:10px;" | CCP-ce_+Glc+viability+CIV | | style="font-size:10px;" | CCP-ce_+Glc+viability+CIV | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D020 | ||
| style="font-size:10px;" | CCP-ce_+viability+CIV | | style="font-size:10px;" | CCP-ce_+viability+CIV | ||
| style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | | style="font-size:10px;" | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D010 | ||
| style="font-size:10px;" | RP1-short | | style="font-size:10px;" | RP1-short | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D011 | ||
| style="font-size:10px;" | RP2-short | | style="font-size:10px;" | RP2-short | ||
| style="font-size:10px;" | A: when malate-anaplerotic activity is zero | | style="font-size:10px;" | A: when malate-anaplerotic activity is zero | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D029 | ||
| style="font-size:10px;" | CCP-mtprep_pce | | style="font-size:10px;" | CCP-mtprep_pce | ||
| style="font-size:10px;" | A: Coupling control protocol, mtprep | | style="font-size:10px;" | A: Coupling control protocol, mtprep | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D022 | ||
| style="font-size:10px;" | CCP-mtprep_Srot | | style="font-size:10px;" | CCP-mtprep_Srot | ||
| style="font-size:10px;" | A: Coupling control protocol, mtprep | | style="font-size:10px;" | A: Coupling control protocol, mtprep | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D047 | ||
| style="font-size:10px;" | CCP-mtprep_PM | | style="font-size:10px;" | CCP-mtprep_PM | ||
| style="font-size:10px;" | A: Coupling control protocol, mtprep | | style="font-size:10px;" | A: Coupling control protocol, mtprep | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D030 | ||
| style="font-size:10px;" | Glutamate anaplerosis | | style="font-size:10px;" | Glutamate anaplerosis | ||
| style="font-size:10px;" | A: Glutamate anaplerotic pathway | | style="font-size:10px;" | A: Glutamate anaplerotic pathway | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D025 | ||
| style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET | | style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET | ||
| style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | | style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D026 | ||
| style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET_mt | | style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET_mt | ||
| style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | | style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D014 | ||
| style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET_pfi | | style="font-size:10px;" | PM+G+S_OXPHOS+Rot_ET_pfi | ||
| style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | | style="font-size:10px;" | A: Additivity between the N- and S-pathway in the Q-junction | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D016 | ||
| style="font-size:10px;" | S_OXPHOS_Rot_O2_pce | | style="font-size:10px;" | S_OXPHOS_Rot_O2_pce | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D015 | ||
| style="font-size:10px;" | S_OXPHOS_Rot_O2_mt | | style="font-size:10px;" | S_OXPHOS_Rot_O2_mt | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D008 | ||
| style="font-size:10px;" | Digitonin test | | style="font-size:10px;" | Digitonin test | ||
| style="font-size:10px;" | A: Optimization of digitonin concentration for pce | | style="font-size:10px;" | A: Optimization of digitonin concentration for pce | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D024 | ||
| style="font-size:10px;" | GM+S_OXPHOS+Rot_ET:pfi | | style="font-size:10px;" | GM+S_OXPHOS+Rot_ET:pfi | ||
| style="font-size:10px;" | A: Maximum mitochondrial respiratory capacity (OXPHOS with NS substrates) and coupling/pathway control | | style="font-size:10px;" | A: Maximum mitochondrial respiratory capacity (OXPHOS with NS substrates) and coupling/pathway control | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D052 | ||
| style="font-size:10px;" | PM+G_OXPHOS_pce | | style="font-size:10px;" | PM+G_OXPHOS_pce | ||
| style="font-size:10px;" | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) | | style="font-size:10px;" | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D027 | ||
| style="font-size:10px;" | PM+G_OXPHOS_mt | | style="font-size:10px;" | PM+G_OXPHOS_mt | ||
| style="font-size:10px;" | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) | | style="font-size:10px;" | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D042 | ||
| style="font-size:10px;" | GM+P+S_OXPHOS+Rot_ET_pfi | | style="font-size:10px;" | GM+P+S_OXPHOS+Rot_ET_pfi | ||
| style="font-size:10px;" | A: Cells or tissue types that display a preference for GM over PM to support NADH-linked respiration | | style="font-size:10px;" | A: Cells or tissue types that display a preference for GM over PM to support NADH-linked respiration | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D043 | ||
| style="font-size:10px;" | F+G+P+S_OXPHOS+Rot_ET | | style="font-size:10px;" | F+G+P+S_OXPHOS+Rot_ET | ||
| style="font-size:10px;" | A: F-pathway in LEAK state and OXPHOS state | | style="font-size:10px;" | A: F-pathway in LEAK state and OXPHOS state | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D044 | ||
| style="font-size:10px;" | F+G+S+Rot_OXPHOS+Omy | | style="font-size:10px;" | F+G+S+Rot_OXPHOS+Omy | ||
| style="font-size:10px;" | A: F-pathway in LEAK state and OXPHOS state | | style="font-size:10px;" | A: F-pathway in LEAK state and OXPHOS state | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D046 | ||
| style="font-size:10px;" | F+G+S_OXPHOS+Rot_ET_mt | | style="font-size:10px;" | F+G+S_OXPHOS+Rot_ET_mt | ||
| style="font-size:10px;" | A: | | style="font-size:10px;" | A: | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D049 | ||
| style="font-size:10px;" | F+G+S_OXPHOS+Rot_ET_pfi | | style="font-size:10px;" | F+G+S_OXPHOS+Rot_ET_pfi | ||
| style="font-size:10px;" | A: | | style="font-size:10px;" | A: | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D054 | ||
| style="font-size:10px;" | O2_GMS_mt4 | | style="font-size:10px;" | O2_GMS_mt4 | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D045 | ||
| style="font-size:10px;" | Pal+Oct+P+G_OXPHOS+S+Rot_ET | | style="font-size:10px;" | Pal+Oct+P+G_OXPHOS+S+Rot_ET | ||
| style="font-size:10px;" | A: | | style="font-size:10px;" | A: | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D032 | ||
| style="font-size:10px;" | PM+G+S+Rot_OXPHOS+Omy | | style="font-size:10px;" | PM+G+S+Rot_OXPHOS+Omy | ||
| style="font-size:10px;" | A: simultaneous determination of O2 flux and mt-membrane potential | | style="font-size:10px;" | A: simultaneous determination of O2 flux and mt-membrane potential | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D035 | ||
| style="font-size:10px;" | OXPHOS (GM+S+Rot+Omy) | | style="font-size:10px;" | OXPHOS (GM+S+Rot+Omy) | ||
| style="font-size:10px;" | A: simultaneous determination of O2 flux and mt-membrane potential | | style="font-size:10px;" | A: simultaneous determination of O2 flux and mt-membrane potential | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D051 | ||
| style="font-size:10px;" | AOX (ce CN+SHAM) | | style="font-size:10px;" | AOX (ce CN+SHAM) | ||
| style="font-size:10px;" | A: Determination of the respiration due to the alternative oxidase pathway | | style="font-size:10px;" | A: Determination of the respiration due to the alternative oxidase pathway | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D053 | ||
| style="font-size:10px;" | AOX-ce SHAM+CN | | style="font-size:10px;" | AOX-ce SHAM+CN | ||
| style="font-size:10px;" | A: Determination of respiration through the CIII-CIV pathway | | style="font-size:10px;" | A: Determination of respiration through the CIII-CIV pathway | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D056 | ||
| style="font-size:10px;" | ATPase (PM) | | style="font-size:10px;" | ATPase (PM) | ||
| style="font-size:10px;" | A: Determination of the presence of ATPases in mitochondrial preparations. | | style="font-size:10px;" | A: Determination of the presence of ATPases in mitochondrial preparations. | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D057 | ||
| style="font-size:10px;" | OXPHOS (F+M+P+G+S+Rot) | | style="font-size:10px;" | OXPHOS (F+M+P+G+S+Rot) | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D063 | ||
| style="font-size:10px;" | S+Rot_OXPHOS | | style="font-size:10px;" | S+Rot_OXPHOS | ||
| style="font-size:10px;" | | | style="font-size:10px;" | | ||
|- | |- | ||
| style="font-size:10px; background-color:# | | style="font-size:10px; background-color:#efefef; color:#333333;" | D065 | ||
| style="font-size:10px;" | Malate anaplerosis | | style="font-size:10px;" | Malate anaplerosis | ||
| style="font-size:10px;" | A: Malate anaplerotic pathway | | style="font-size:10px;" | A: Malate anaplerotic pathway | ||
|} | |} | ||
Revision as of 14:41, 9 July 2019
Attention! Attention!
Disclaimer: This is an alpha version and page is a currently still under development. Please DO NOT consider information below in this page to be true or of any scientific value.
This page was created to provide a list and details about DatLab protocols for analysis of mitochondrial respiration.
Protocol Marks
Protocol name | DLP# | Step 1 | Step 2 | Step 3 | Step 4 | Step 5 | Step 6 | Step 7 | Step 8 | Step 9 | Step 10 | Step 11 | Step 12 | Step 13 | Step 14 | Step 15 | Step 16 | Step 17 | Step 18 | Step 19 | Step 20 | # of steps |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SUIT-001_O2_ce-pce_D003 | D003 | ce1 | 1Dig | 1PM | 2D | 2c | 3U | 4G | 5S | 6Oct | 7Rot | 8Gp | 9Ama | 10AsTm | 11Azd | 14 | ||||||
SUIT-001_O2_PBMC-PLT_D004 | D004 | ce1 | 1Dig | 1PM | 2D | 2c | 3U | 4G | 5S | 6Oct | 7Rot | 8Gp | 9Ama | 10AsTm | 11Azd | 14 | ||||||
SUIT-001_O2_mt_D001 | D001 | 1mt | 1PM | 2D | 2c | 3U | 4G | 5S | 6Oct | 7Rot | 8Gp | 9Ama | 10AsTm | 11Azd | 13 | |||||||
SUIT-001_O2_pfi_D002 | D002 | 1pfi | 1PM | 2D | 2c | 3U | 4G | 5S | 6Oct | 7Rot | 8Gp | 9Ama | 10AsTm | 11Azd | 13 | |||||||
SUIT-002_O2_ce-pce_D007 | D007 | ce1 | 1Dig | 1D | 2M.1 | 3Oct | 3c | 4M2 | 5P | 6G | 7S | 8Gp | 9U | 10Rot | 11Ama | 12AsTm | 13Azd | 16 | ||||
SUIT-002_O2_ce-pce-PBMC-PLT_D007a | D007a | ce1 | 1Dig | 1D | 2M.1 | 3Oct | 3c | 4M2 | 5P | 6G | 7S | 8Gp | 9U | 10Rot | 11Ama | 12AsTm | 13Azd | 16 | ||||
SUIT-002_O2_mt_D005 | D005 | 1mt | 1D | 2M.1 | 3Oct | 3c | 4M2 | 5P | 6G | 7S | 8Gp | 9U | 10Rot | 11Ama | 12AsTm | 13Azd | 15 | |||||
SUIT-002_O2_pfi_D006 | D006 | 1pfi | 1D | 2M.1 | 3Oct | 3c | 4M2 | 5P | 6G | 7S | 8Gp | 9U | 10Rot | 11Ama | 12AsTm | 13Azd | 15 | |||||
SUIT-003_O2_ce_D009 | D009 | ce1 | ce2Omy | ce3U | ce4Ama | 4 | ||||||||||||||||
SUIT-003_O2_ce_D012 | D012 | ce1 | ce2P | ce2Omy | ce3U | ce4Rot | ce5Ama | 6 | ||||||||||||||
SUIT-003_O2_ce_D028 | D028 | ce1 | ce2Omy | ce3U | ce4Rot | ce5S | ce6Ama | 6 | ||||||||||||||
SUIT-003_O2_ce_D037 | D037 | ce1 | ce1Glc | ce2Omy | ce3U | ce4Ama | 5 | |||||||||||||||
SUIT-003_O2_ce_D038 | D038 | ce1 | ce2Omy | ce3U | ce3Glc | ce3'U | ce4Ama | 6 | ||||||||||||||
SUIT-003_O2_ce_D039 | D039 | ce1 | ce2Omy | ce3U | ce4Rot | ce4Ama | 5 | |||||||||||||||
SUIT-003_O2_ce_D050 | D050 | ce1 | ce1Snv | ce2Omy | ce3U | ce4Rot | ce5Ama | 6 | ||||||||||||||
SUIT-003_O2_ce_D060 | D060 | ce1 | ce2Omy | ce3U | ce4Rot | ce5Snv | ce6Mnanv | ce7Ama | 7 | |||||||||||||
SUIT-003_O2_ce_D061 | D061 | ce1 | ce2Omy | ce3U | ce4Rot | ce5DMSO | ce6DMSO | ce7Ama | 7 | |||||||||||||
SUIT-003_O2_ce_D062 | D062 | ce1 | ce1DMSO | ce2Omy | ce3U | ce4Rot | ce5Ama | 6 | ||||||||||||||
SUIT-003_O2_ce-pce_D013 | D013 | ce1 | ce1P | ce2Omy | ce3U | ce3Glc | ce3M | ce4Rot | ce5S | 1Dig | 1U | 1c | 2Ama | 3AsTm | 4Azd | 14 | ||||||
SUIT-003_O2_ce-pce_D018 | D018 | ce1 | ce1P | ce2Omy | ce3U | ce3Glc | ce4Rot | ce5S | 1Dig | 1c | 2Ama | 3AsTm | 4Azd | 12 | ||||||||
SUIT-003_O2_ce-pce_D020 | D020 | ce1 | ce1P | ce2Omy | ce3U | ce4Rot | ce5S | 1Dig | 1c | 2Ama | 3AsTm | 4Azd | 11 | |||||||||
SUIT-004_O2_pfi_D010 | D010 | 1pfi | 1PM | 2D | 2c | 3U | 4S | 5Rot | 6Ama | 7AsTm | 8Azd | 10 | ||||||||||
SUIT-005_O2_pfi_D011 | D011 | 1pfi | 1OctM | 2D | 2c | 3P | 4S | 5U | 6Rot | 7Ama | 8AsTm | 9Azd | 11 | |||||||||
SUIT-006_O2_ce-pce_D029 | D029 | ce1 | 1Dig | 1PM | 2D | 2c | 3Omy | 4U | 5Ama | 8 | ||||||||||||
SUIT-006_O2_mt_D022 | D022 | 1mt | 1S(Rot) | 2D | 2c | 3Omy | 4U | 5Ama | 7 | |||||||||||||
SUIT-006_O2_mt_D047 | D047 | 1mt | 1PM | 2D | 2c | 3Omy | 4U | 5Ama | 7 | |||||||||||||
SUIT-007_O2_ce-pce_D030 | D030 | ce1 | 1Dig | 1G | 2D | 2c | 3M | 4U | 5Ama | 8 | ||||||||||||
SUIT-008_O2_ce-pce_D025 | D025 | ce1 | 1Dig | 1PM | 2D | 2c | 3G | 4S | 5U | 6Rot | 7Ama | 8AsTm | 9Azd | 12 | ||||||||
SUIT-008_O2_mt_D026 | D026 | 1mt | 1PM | 2D | 2c | 3G | 4S | 5U | 6Rot | 7Ama | 8AsTm | 9Azd | 11 | |||||||||
SUIT-008_O2_pfi_D014 | D014 | 1pfi | 1PM | 2D | 2c | 3G | 4S | 5U | 6Rot | 7Ama | 8AsTm | 9Azd | 11 | |||||||||
SUIT-009_O2_ce-pce_D016 | D016 | ce1 | 1Dig | 1S | 2D | 2c | 3P | 4Rot | 5Ama | 8 | ||||||||||||
SUIT-009_O2_mt_D015 | D015 | 1mt | 1S | 2D | 2c | 3P | 4Rot | 5Ama | 7 | |||||||||||||
SUIT-010_O2_ce-pce_D008 | D008 | ce1 | ce2Rot | ce3S | ce4D | 1Dig | 1c | 6 | ||||||||||||||
SUIT-011_O2_pfi_D024 | D024 | 1pfi | 1GM | 2D | 2c | 3S | 4U | 5Rot | 6Ama | 8 | ||||||||||||
SUIT-012_O2_ce-pce_D052 | D052 | ce1 | 1Dig | 1PM | 2D | 2c | 3G | 4U | 5Ama | 8 | ||||||||||||
SUIT-012_O2_mt_D027 | D027 | 1mt | 1PM | 2D | 2c | 3G | 4U | 5Ama | 7 | |||||||||||||
SUIT-014_O2_pfi_D042 | D042 | 1pfi | 1GM | 2D | 2c | 3P | 4S | 5U | 6Rot | 7Ama | 9 | |||||||||||
SUIT-015_O2_pti_D043 | D043 | 1pti | 1OctM | 2D | 3G | 4P | 5S | 6U | 7Rot | 8Ama | 9 | |||||||||||
SUIT-016_O2_pfi_D044 | D044 | 1pfi | 1OctM | 2D | 3G | 4S | 5Rot | 6Omy | 7U | 7c | 8Ama | 10 | ||||||||||
SUIT-017_O2_mt _D046 | D046 | 1mt | 1OctM | 2D | 2c | 3G | 4S | 5U | 6Rot | 7Ama | 9 | |||||||||||
SUIT-017_O2_pfi_D049 | D049 | 1pfi | 1OctM | 2D | 2c | 3G | 4S | 5U | 6Rot | 7Ama | 9 | |||||||||||
SUIT-018_O2_mt_D054 | D054 | 1mt | 1GMS | 2D | 3Ama | 4 | ||||||||||||||||
SUIT-019_O2_pfi_D045 | D045 | 1pfi | 1PalM | 2D | 2c | 3Oct | 4P | 5G | 6U | 7S | 8Rot | 9Ama | 11 | |||||||||
SUIT-020_O2_mt_D032 | D032 | ROX | N_L | N_P | N_P | N_P | NS_P | S_P | S_L | S_E | ROX | 10 | ||||||||||
SUIT-021_O2_mt_D035 | D035 | 1mt | 1GM | 2D | 2c | 3S | 4Rot | 5Omy | 6U | 7Ama | 9 | |||||||||||
SUIT-022 O2 ce D051 | D051 | ce1 | ce2KCN | ce3SHAM | 3 | |||||||||||||||||
SUIT-023 O2 ce D053 | D053 | ce1 | ce2SHAM | ce3KCN | 3 | |||||||||||||||||
SUIT-024_O2_ce-pce_D056 | D056 | ce1 | 1Dig | 1PM | 2T | 2D | 3Omy | 4Ama | 7 | |||||||||||||
SUIT-025_O2_mt_D057 | D057 | 1mt | 1D | 2M.1 | 03-Oct | 3c | 4M2 | 5P | 6G | 7S | 8Rot | 9Ama | 11 | |||||||||
SUIT-026_O2_mt_D063 | D063 | 1mt | 1S | 2Rot | 3D | 3c | 4Ama | 6 | ||||||||||||||
SUIT-027_O2_ce-pce_D065 | D065 | ce1 | 1Dig | 1M.05 | 2D | 3M | 3M´ | 4P | 5G | 8 |
Short names and notes
DLP# | Short name | Notes |
---|---|---|
D003 | RP1_pce | Doerrier 2018 Methods Mol Biol |
D004 | RP1_PBMC-PLT | Doerrier 2018 Methods Mol Biol |
D001 | RP1_mt | Doerrier 2018 Methods Mol Biol |
D002 | RP1_pfi | Doerrier 2018 Methods Mol Biol |
D007 | RP2_pce | A: Doerrier 2018 Methods Mol Biol |
D007a | RP2_PBMC-PLT | A: Doerrier 2018 Methods Mol Biol |
D005 | RP2_mt | A: Doerrier 2018 Methods Mol Biol |
D006 | RP2_pfi | A: Doerrier 2018 Methods Mol Biol |
D009 | CCP-ce | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D012 | CCP-ce_+P | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D028 | CCP-ce_+S | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D037 | CCP-ce_+Glc+(Omy) | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D038 | CCP-ce_+(Omy)+Glc | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D039 | CCP-ce_+(Omy) | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D050 | CCP-ce_+Snv+(Omy) | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D060 | CCP-ce_+(Omy)+Snv+Mnanv | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D061 | CCP-ce_+(Omy)+DMSO+DMSO | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D062 | CCP-ce_+DMSO+(Omy) | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D013 | CCP-ce_+Glc+M+viability+CIV | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D018 | CCP-ce_+Glc+viability+CIV | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D020 | CCP-ce_+viability+CIV | A: Coupling control protocol, living cells »MiPNet08.09 CellRespiration Bioblast pdf |
D010 | RP1-short | |
D011 | RP2-short | A: when malate-anaplerotic activity is zero |
D029 | CCP-mtprep_pce | A: Coupling control protocol, mtprep |
D022 | CCP-mtprep_Srot | A: Coupling control protocol, mtprep |
D047 | CCP-mtprep_PM | A: Coupling control protocol, mtprep |
D030 | Glutamate anaplerosis | A: Glutamate anaplerotic pathway |
D025 | PM+G+S_OXPHOS+Rot_ET | A: Additivity between the N- and S-pathway in the Q-junction |
D026 | PM+G+S_OXPHOS+Rot_ET_mt | A: Additivity between the N- and S-pathway in the Q-junction |
D014 | PM+G+S_OXPHOS+Rot_ET_pfi | A: Additivity between the N- and S-pathway in the Q-junction |
D016 | S_OXPHOS_Rot_O2_pce | |
D015 | S_OXPHOS_Rot_O2_mt | |
D008 | Digitonin test | A: Optimization of digitonin concentration for pce |
D024 | GM+S_OXPHOS+Rot_ET:pfi | A: Maximum mitochondrial respiratory capacity (OXPHOS with NS substrates) and coupling/pathway control |
D052 | PM+G_OXPHOS_pce | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) |
D027 | PM+G_OXPHOS_mt | A: Coupling control (L- P- E) with NADH-linked substrates (PM and PGM) |
D042 | GM+P+S_OXPHOS+Rot_ET_pfi | A: Cells or tissue types that display a preference for GM over PM to support NADH-linked respiration |
D043 | F+G+P+S_OXPHOS+Rot_ET | A: F-pathway in LEAK state and OXPHOS state |
D044 | F+G+S+Rot_OXPHOS+Omy | A: F-pathway in LEAK state and OXPHOS state |
D046 | F+G+S_OXPHOS+Rot_ET_mt | A: |
D049 | F+G+S_OXPHOS+Rot_ET_pfi | A: |
D054 | O2_GMS_mt4 | |
D045 | Pal+Oct+P+G_OXPHOS+S+Rot_ET | A: |
D032 | PM+G+S+Rot_OXPHOS+Omy | A: simultaneous determination of O2 flux and mt-membrane potential |
D035 | OXPHOS (GM+S+Rot+Omy) | A: simultaneous determination of O2 flux and mt-membrane potential |
D051 | AOX (ce CN+SHAM) | A: Determination of the respiration due to the alternative oxidase pathway |
D053 | AOX-ce SHAM+CN | A: Determination of respiration through the CIII-CIV pathway |
D056 | ATPase (PM) | A: Determination of the presence of ATPases in mitochondrial preparations. |
D057 | OXPHOS (F+M+P+G+S+Rot) | |
D063 | S+Rot_OXPHOS | |
D065 | Malate anaplerosis | A: Malate anaplerotic pathway |
Reference States
DLP# | Reference st. | Mark | Baseline st. | Mark |
---|---|---|---|---|
D003 | 8 | 5S | 12 | 9Ama |
D004 | 8 | 5S | 12 | 9Ama |
D001 | 7 | 5S | 11 | 9Ama |
D002 | 7 | 5S | 11 | 9Ama |
D007 | 12 | 9U | 14 | 11Ama |
D007a | 12 | 9U | 14 | 11Ama |
D005 | 11 | 9U | 13 | 11Ama |
D006 | 11 | 9U | 13 | 11Ama |
D009 | 3 | ce3U | 4 | ce4Ama |
D012 | 4 | ce3U | 6 | ce5Ama |
D028 | 3 | ce3U | 6 | ce6Ama |
D037 | 4 | ce3U | 5 | ce4Ama |
D038 | 3 | ce3U | 6 | ce4Ama |
D039 | 3 | ce3U | 4 | ce4Rot |
D050 | 4 | ce3U | 6 | ce5Ama |
D060 | 3 | ce3U | 7 | ce7Ama |
D061 | 3 | ce3U | 7 | ce7Ama |
D062 | 4 | ce3U | 6 | ce5Ama |
D013 | 4 | ce3U | 12 | 2Ama |
D018 | 4 | ce3U | 10 | 2Ama |
D020 | 4 | ce3U | 9 | 2Ama |
D010 | 6 | 4S | 8 | 6Ama |
D011 | 7 | 5U | 9 | 7Ama |
D029 | 7 | 4U | 8 | 5Ama |
D022 | 6 | 4U | 7 | 5Ama |
D047 | 6 | 4U | 7 | 5Ama |
D030 | 7 | 4U | 8 | 5Ama |
D025 | 8 | 5U | 10 | 7Ama |
D026 | 7 | 5U | 9 | 7Ama |
D014 | 7 | 5U | 9 | 7Ama |
D016 | 6 | 3P | 8 | 5Ama |
D015 | 5 | 3P | 7 | 5Ama |
D008 | 5 | 1Dig | 2 | ce2Rot |
D024 | 6 | 4U | 8 | 6Ama |
D052 | 8 | 5Ama | 7 | 4U |
D027 | 6 | 4U | 7 | 5Ama |
D042 | 7 | 5U | 9 | 7Ama |
D043 | 7 | 6U | 9 | 8Ama |
D044 | 8 | 7U | 10 | 8Ama |
D046 | 7 | 5U | 9 | 7Ama |
D049 | 7 | 5U | 9 | 7Ama |
D054 | 3 | 2D | 4 | 3Ama |
D045 | 9 | 7S | 11 | 9Ama |
D032 | 9 | 7U | 10 | 8Ama |
D035 | 8 | 6U | 9 | 7Ama |
D051 | 3 | ce3SHAM | 3 | ce3SHAM |
D053 | 3 | ce3KCN | 3 | ce3KCN |
D056 | 5 | 2D | 7 | 4Ama |
D057 | 9 | 7S | 11 | 9Ama |
D063 | 4 | 3D | 6 | 4Ama |
D065 | 8 | 5G | 2 | 1Dig |